Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LN341_RS15350 Genome accession   NZ_CP090364
Coordinates   3304075..3305169 (-) Length   364 a.a.
NCBI ID   WP_234203747.1    Uniprot ID   -
Organism   Photobacterium sp. TLY01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3299075..3310169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN341_RS15320 (LN341_15320) hemF 3299645..3300547 (-) 903 WP_046222125.1 oxygen-dependent coproporphyrinogen oxidase -
  LN341_RS15325 (LN341_15325) tsaC 3300555..3301112 (-) 558 WP_046222134.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  LN341_RS15330 (LN341_15330) purE 3301313..3301801 (+) 489 WP_046222124.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LN341_RS15335 (LN341_15335) - 3301804..3302928 (+) 1125 WP_234203745.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LN341_RS15340 (LN341_15340) - 3303004..3303564 (-) 561 WP_234203746.1 type I DNA topoisomerase -
  LN341_RS15345 (LN341_15345) - 3303599..3304072 (-) 474 WP_046222121.1 DUF494 family protein -
  LN341_RS15350 (LN341_15350) dprA 3304075..3305169 (-) 1095 WP_234203747.1 DNA-processing protein DprA Machinery gene
  LN341_RS15355 (LN341_15355) - 3305162..3305845 (-) 684 WP_234203748.1 hypothetical protein -
  LN341_RS15360 (LN341_15360) def 3306107..3306616 (+) 510 WP_046222118.1 peptide deformylase -
  LN341_RS15365 (LN341_15365) fmt 3306632..3307576 (+) 945 WP_234203749.1 methionyl-tRNA formyltransferase -
  LN341_RS15370 (LN341_15370) rsmB 3307712..3309010 (+) 1299 WP_234203750.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39021.60 Da        Isoelectric Point: 6.2818

>NTDB_id=641708 LN341_RS15350 WP_234203747.1 3304075..3305169(-) (dprA) [Photobacterium sp. TLY01]
MSDREDWLALAAVPGLGGQRIQQLLAQASVAEIRNMPEPHLMAMGLKGPQIAQLRRPDSKRLQEALHWCEQDNQHLLVLS
DPAYPRLLKEISSPPPVLFIRGESRWLSEPQLAIVGSRHASLDGREAAREFAAAMVAADYVVTSGLALGVDGHAHDSALK
NGGATVAVLGSGLGRIYPAAHRELAGLIAEQGALVSEFWPSEPPRPQHFPRRNRIISGLSVGVLVVEAALKSGSLITARY
ALEQDRDVFALPGSIYAPGSKGCNALIKSGAKLVESPVDIFEEVGALTHCAKSSQMSVSLPHPENEQLPFNAVLANVGSE
ATPVDVVAERCDQPVHEVMTQLLELELQGVITSVPGGYIRSRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=641708 LN341_RS15350 WP_234203747.1 3304075..3305169(-) (dprA) [Photobacterium sp. TLY01]
ATGAGTGACAGAGAAGACTGGCTGGCACTGGCGGCGGTCCCCGGTCTGGGCGGTCAGCGAATCCAGCAATTGCTGGCGCA
GGCCTCAGTGGCGGAGATCCGTAACATGCCCGAACCGCACCTGATGGCGATGGGGCTGAAAGGACCACAAATCGCACAGC
TGCGCCGGCCGGACAGCAAGCGGTTACAGGAAGCGCTGCACTGGTGCGAACAGGATAACCAACACTTGCTGGTCTTAAGT
GACCCGGCTTACCCTCGTCTGCTGAAGGAAATCAGCTCCCCGCCGCCAGTCCTCTTTATCCGCGGAGAGTCCCGCTGGCT
CAGTGAGCCGCAACTGGCGATTGTCGGCAGCCGGCATGCCAGTCTGGATGGCCGGGAAGCGGCCCGGGAGTTTGCCGCGG
CTATGGTGGCAGCCGATTATGTGGTGACCAGTGGCCTGGCGCTGGGAGTCGATGGCCATGCCCATGACAGTGCCCTGAAA
AATGGCGGGGCGACCGTTGCTGTGCTGGGCTCTGGCCTGGGGCGTATCTACCCTGCAGCGCATCGGGAGCTGGCGGGTCT
GATTGCAGAGCAAGGAGCTCTGGTCTCTGAGTTCTGGCCGTCAGAGCCGCCCAGGCCGCAGCATTTTCCCCGTCGCAACC
GTATCATCAGTGGCTTGTCTGTCGGCGTGCTTGTGGTGGAGGCTGCACTGAAGAGCGGCTCGCTGATCACCGCCCGTTAT
GCGCTGGAGCAAGATCGCGATGTGTTTGCCCTCCCCGGCTCAATTTATGCGCCGGGGAGCAAAGGCTGTAACGCGCTGAT
TAAATCCGGTGCTAAACTGGTGGAAAGCCCGGTCGATATCTTTGAGGAGGTTGGCGCACTCACCCACTGCGCAAAAAGTA
GTCAAATGAGCGTATCGCTGCCACATCCTGAAAATGAGCAATTGCCATTTAATGCGGTGTTGGCTAACGTAGGCAGTGAA
GCAACACCCGTAGATGTGGTTGCTGAACGTTGTGATCAACCTGTCCATGAAGTAATGACGCAATTGCTGGAGTTAGAATT
GCAAGGGGTTATCACTTCAGTGCCCGGTGGCTATATCAGATCGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-275)

DprA winged helix domain (DprA_WH)

(311-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

52.044

100

0.525
  dprA Vibrio campbellii strain DS40M4

52.066

99.725

0.519
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.478
  dprA Neisseria meningitidis MC58

37.755

100

0.407
  dprA Neisseria meningitidis strain C311

37.755

100

0.407
  dprA Legionella pneumophila strain ERS1305867

46.429

84.615

0.393
  dprA Haemophilus influenzae Rd KW20

49.281

76.374

0.376
  dprA Neisseria gonorrhoeae strain FA1090

41.379

87.637

0.363