Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LN341_RS11055 Genome accession   NZ_CP090364
Coordinates   2330047..2330331 (-) Length   94 a.a.
NCBI ID   WP_046218761.1    Uniprot ID   -
Organism   Photobacterium sp. TLY01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2325047..2335331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN341_RS11030 (LN341_11030) - 2325476..2326690 (+) 1215 WP_046218757.1 pyridoxal phosphate-dependent aminotransferase -
  LN341_RS11035 (LN341_11035) yfbR 2326838..2327422 (+) 585 WP_046218758.1 5'-deoxynucleotidase -
  LN341_RS11040 (LN341_11040) - 2327422..2328786 (+) 1365 WP_046218759.1 anti-phage deoxyguanosine triphosphatase -
  LN341_RS11045 (LN341_11045) - 2328789..2329400 (-) 612 WP_046218760.1 tRNA-uridine aminocarboxypropyltransferase -
  LN341_RS11050 (LN341_11050) rrtA 2329411..2329983 (+) 573 WP_234203300.1 rhombosortase -
  LN341_RS11055 (LN341_11055) comEA 2330047..2330331 (-) 285 WP_046218761.1 ComEA family DNA-binding protein Machinery gene
  LN341_RS11060 (LN341_11060) ppiD 2330465..2332357 (-) 1893 WP_234203301.1 peptidylprolyl isomerase -
  LN341_RS11065 (LN341_11065) hupB 2332552..2332824 (-) 273 WP_027252850.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10105.49 Da        Isoelectric Point: 4.5720

>NTDB_id=641703 LN341_RS11055 WP_046218761.1 2330047..2330331(-) (comEA) [Photobacterium sp. TLY01]
MKNTFALILLASSVVLPGVVDASDKHEGIEITININSANAEELDKLLLGVGPDKAQNIIDYREQNGAFATIDDLSKVKGI
GASTVEKNRDRIQL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=641703 LN341_RS11055 WP_046218761.1 2330047..2330331(-) (comEA) [Photobacterium sp. TLY01]
ATGAAAAACACATTTGCATTAATTTTGCTGGCATCGAGCGTTGTTTTACCGGGAGTGGTAGACGCGTCCGATAAGCATGA
AGGGATTGAAATAACAATAAATATCAATAGTGCCAATGCTGAAGAACTGGACAAACTGCTATTAGGCGTTGGTCCGGATA
AGGCTCAGAACATTATTGATTACCGGGAGCAGAATGGGGCTTTTGCCACGATTGATGATCTGAGTAAGGTCAAAGGGATT
GGTGCCTCAACTGTAGAAAAAAATCGTGATCGTATTCAGCTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

51.648

96.809

0.5
  comEA Vibrio parahaemolyticus RIMD 2210633

48.936

100

0.489
  comEA Vibrio cholerae strain A1552

60.274

77.66

0.468
  comEA Vibrio cholerae C6706

60.274

77.66

0.468
  comE1/comEA Haemophilus influenzae Rd KW20

47.561

87.234

0.415
  comEA Acinetobacter baylyi ADP1

54.412

72.34

0.394
  comEA/celA/cilE Streptococcus mitis NCTC 12261

45.122

87.234

0.394