Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LXN51_RS11375 Genome accession   NZ_CP090355
Coordinates   2441948..2444026 (+) Length   692 a.a.
NCBI ID   WP_234206304.1    Uniprot ID   -
Organism   Pseudomonas kribbensis strain H38E-23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2436948..2449026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN51_RS11355 (LXN51_11355) comM 2439162..2440226 (+) 1065 WP_007952389.1 pilus assembly protein PilM Machinery gene
  LXN51_RS11360 (LXN51_11360) - 2440226..2440792 (+) 567 WP_085698115.1 PilN domain-containing protein -
  LXN51_RS11365 (LXN51_11365) pilO 2440789..2441412 (+) 624 WP_085698116.1 type 4a pilus biogenesis protein PilO -
  LXN51_RS11370 (LXN51_11370) - 2441409..2441933 (+) 525 WP_085704938.1 pilus assembly protein PilP -
  LXN51_RS11375 (LXN51_11375) pilQ 2441948..2444026 (+) 2079 WP_234206304.1 type IV pilus secretin PilQ Machinery gene
  LXN51_RS11380 (LXN51_11380) aroK 2444031..2444549 (+) 519 WP_011332081.1 shikimate kinase AroK -
  LXN51_RS11385 (LXN51_11385) aroB 2444702..2445802 (+) 1101 WP_085704941.1 3-dehydroquinate synthase -
  LXN51_RS11390 (LXN51_11390) - 2445813..2447414 (+) 1602 WP_085698120.1 AAA family ATPase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75086.25 Da        Isoelectric Point: 5.5748

>NTDB_id=641650 LXN51_RS11375 WP_234206304.1 2441948..2444026(+) (pilQ) [Pseudomonas kribbensis strain H38E-23]
MNRIFSTLGFSLWIALLSPMVQAANLKALDVAALPGDRVELKLSFDGPPPQPKGYTTDSPARIALDLPGVASQLTSKTRD
LGSGNARTATVVEANNRTRLIISLTQLAPYDTRVEGNTVFVVVGQGSKVAAPRTAARSPRAAPVAAPGRTFTPTARAIRG
VDFQRGTAGEGNVVIDLSDPAIAPDIQEHDGKIMLNFARTQLPEPLRVRLDVKDFATPVQFVNAGVSGDRATITVEPSGT
FEYSTYQTDNKLTVSIRPLTIDDLQKRNADRNSYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNV
PWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEAK
VDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSN
GSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY
QEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSN
TQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=641650 LXN51_RS11375 WP_234206304.1 2441948..2444026(+) (pilQ) [Pseudomonas kribbensis strain H38E-23]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGCTTTCGCCGATGGTACAGGCAGCCAATCTGAA
GGCGCTGGACGTCGCGGCACTGCCGGGCGACCGGGTCGAGCTGAAGCTGTCGTTCGACGGCCCGCCCCCGCAACCTAAAG
GCTACACCACCGATTCGCCGGCAAGGATCGCCCTCGATCTGCCGGGGGTGGCCAGTCAGCTGACGAGCAAGACTCGCGAC
CTGGGCAGCGGCAATGCCCGCACGGCCACGGTAGTGGAGGCCAATAACCGGACGCGGCTGATCATCAGCCTGACGCAACT
GGCACCTTACGACACCCGGGTCGAAGGCAATACGGTGTTCGTGGTGGTCGGGCAAGGCAGCAAAGTCGCTGCCCCGCGTA
CGGCGGCGCGTTCACCGCGCGCAGCACCTGTGGCCGCGCCAGGCCGCACGTTTACGCCGACTGCCAGAGCCATTCGCGGC
GTGGATTTCCAGCGTGGCACGGCGGGCGAGGGCAATGTGGTCATCGATTTGTCCGACCCTGCCATCGCTCCGGACATCCA
GGAGCACGACGGCAAGATCATGCTCAATTTCGCCCGTACCCAATTGCCCGAACCGCTGCGGGTACGCCTCGACGTCAAGG
ATTTCGCCACCCCGGTGCAGTTCGTCAATGCCGGTGTCAGCGGTGATCGGGCGACGATCACCGTCGAACCCAGCGGTACG
TTCGAGTATTCCACTTACCAGACCGACAACAAGCTGACCGTCAGCATCCGCCCATTGACCATCGATGACCTGCAAAAACG
CAACGCCGACCGCAACAGCTACAGCGGCGAAAAGCTCTCGCTCAACTTTCAGGACATCGATGTGCGTTCGGTGCTGCAAC
TGATCGCCGATTTCACCAACCTCAATCTGGTGGCCAGCGATACGGTGCAGGGCGGCATTACCTTGCGCCTGCAGAACGTG
CCGTGGGATCAGGCGCTGGATCTGGTGCTCAAGACCAAAGGCCTGGACAAGCGCAAGGTCGGCAACGTGTTGCTGGTGGC
GCCCGCAGATGAGATTGCAGCGCGGGAACGGCAGGAACTGGAGTCGCAGAAACAGATCGCTGAGCTGGCGCCGTTGCGCC
GCGAGCTGCTGCAAGTGAACTACGCCAAGGCTGCGGACATCGCCAAGTTGTTCCAGTCGGTCACCAGCGCCGAGGCCAAG
GTAGACGAACGGGGTTCGATCACCGTCGATGAGCGGACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGACGA
GCTGCGGCGGATCGTGGCGCAACTGGATATTCCGGTGCGTCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAACGTCG
ACTACGACAAGAGCCTGGGCGTGCGCTGGGGCGGCTCGATCCAGAACAAGGGCAACTGGAACACTTCCGGGGTCAGCAAC
GGCTCTTCGACCACCATTGGCACGCCGGGCAGCACCAGCACCAACTCGCCGTTCGTCGACATGGGTACAGTCAACAACAC
GTCCGGGATCGGCATCGCATTCATCACCGACAACGTCTTGCTGGACCTTGAGCTGACCGCGATGGAGAAAACCGGCAACG
GCGAAATCGTCTCGCAGCCCAAGGTGGTCACCTCCGACAAGGAAACCGCGAAAATCCTCAAGGGCACCGAGATTCCGTAT
CAGGAAGCCAGCTCCAGCGGCGCTACGTCGGTGTCCTTCAAGGAAGCGTCGCTGTCGCTGGAAGTGACGCCGCAGATCAC
TCCGGACAACCGCATCATCATGGAGGTGAAGGTCACCAAGGACGAACCGGATTACCTGAACAAAGTGCAGGATGTTCCGC
CGATCAAGAAGAACGAGGTCAATGCCAAGGTGCTGGTGAACGACGGCGAGACCATCGTGATCGGGGGCGTTTTCTCAAAT
ACTCAAAGCAAGGTCGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGT
TTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)

AMIN domain (AMIN)

(37-121)

Bacterial type II and III secretion system protein (Secretin)

(527-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.608

100

0.74
  pilQ Acinetobacter baumannii D1279779

38.051

100

0.412
  pilQ Acinetobacter baumannii strain A118

38.051

100

0.412
  comQ Acinetobacter baylyi ADP1

40.634

100

0.408
  pilQ Legionella pneumophila strain Lp02

37.926

97.543

0.37
  pilQ Legionella pneumophila strain ERS1305867

37.89

97.254

0.368