Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LXN51_RS11355 Genome accession   NZ_CP090355
Coordinates   2439162..2440226 (+) Length   354 a.a.
NCBI ID   WP_007952389.1    Uniprot ID   J2PGW6
Organism   Pseudomonas kribbensis strain H38E-23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2434162..2445226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN51_RS11345 (LXN51_11345) - 2434987..2436255 (+) 1269 WP_085698113.1 malic enzyme-like NAD(P)-binding protein -
  LXN51_RS11350 (LXN51_11350) - 2436499..2438943 (-) 2445 WP_371918985.1 penicillin-binding protein 1A -
  LXN51_RS11355 (LXN51_11355) comM 2439162..2440226 (+) 1065 WP_007952389.1 pilus assembly protein PilM Machinery gene
  LXN51_RS11360 (LXN51_11360) - 2440226..2440792 (+) 567 WP_085698115.1 PilN domain-containing protein -
  LXN51_RS11365 (LXN51_11365) pilO 2440789..2441412 (+) 624 WP_085698116.1 type 4a pilus biogenesis protein PilO -
  LXN51_RS11370 (LXN51_11370) - 2441409..2441933 (+) 525 WP_085704938.1 pilus assembly protein PilP -
  LXN51_RS11375 (LXN51_11375) pilQ 2441948..2444026 (+) 2079 WP_234206304.1 type IV pilus secretin PilQ Machinery gene
  LXN51_RS11380 (LXN51_11380) aroK 2444031..2444549 (+) 519 WP_011332081.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38097.60 Da        Isoelectric Point: 4.6857

>NTDB_id=641649 LXN51_RS11355 WP_007952389.1 2439162..2440226(+) (comM) [Pseudomonas kribbensis strain H38E-23]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGERYRVEAYAVEPLPASAVVEKNIAELEGVGQALSRVLVKARTGLKTVAV
AVAGSAVITKVIEMDAGLSDDELENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQDRLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEERLNTPTQVANP
FSDMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=641649 LXN51_RS11355 WP_007952389.1 2439162..2440226(+) (comM) [Pseudomonas kribbensis strain H38E-23]
GTGCTAGGACTCTTCAATAAAAAGGCCAATACGTTACTGGGGATCGACATCAGTTCCACATCGGTGAAGCTGCTGGAGCT
GAGTCGTCAGGGGGAGCGCTACCGGGTCGAGGCGTATGCGGTGGAGCCGTTGCCGGCGAGTGCCGTGGTCGAAAAGAACA
TCGCCGAGCTCGAGGGCGTCGGCCAGGCCCTGTCCCGGGTCCTGGTCAAGGCACGCACCGGGCTGAAAACCGTGGCAGTG
GCGGTGGCCGGTTCGGCGGTGATCACCAAGGTCATCGAGATGGACGCCGGGCTGTCCGACGACGAACTGGAAAACCAGCT
CAAAATCGAGGCCGATCAATACATTCCCTATCCGCTGGACGAGGTTGCCATCGACTTCGAAGTCCAGGGCGTCTCGCCGC
GCAACCCCGAGCGGGTCAACGTGCTGCTGGCCGCCTGTCGCAAGGAAAACGTCGAAGTCCGCGAAGCGGCGCTCGCACTG
GCCGGGCTGACTGCGCGGGTGGTGGATGTCGAAGCCTATGCGCTGGAACGTTCGTTCGGCCTGCTGGCCACGCAACTGGC
CGCGTCCCAGGACCGGCTGACGGTGGCCGTGGTCGACATCGGCGCCACCATGACCACCCTCAGCGTCCTGCACAATGGCC
GGATCATCTACACCCGCGAACAATTGTTCGGTGGTCGACAACTGACCGAGGAAATCCAGCGCCGTTATGGTCTGACCCTT
GAGCAGGCGGGGCTCGCCAAGAAGCAGGGTGGGCTGCCGGACGACTACGTCAGCGAGGTGCTGCAACCGTTTCGCGAGGC
GCTGGTGCAGCAGGTGTCGCGCTCCCTGCAGTTCTTTTTCGCCTCCGGCCAGTACAACGCCGTCGACCACATACTGTTGG
CCGGCGGCACGGCGTCGGTGCCCGGGCTCGACCGGCTGATCGAAGAGCGCCTGAACACCCCGACCCAGGTTGCCAACCCG
TTTTCCGACATGGCCTTGAGCAGCAAAGTCAACGCCGGGGCGCTGGCAAGCGATGCGCCGGCCCTGATGATCGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2PGW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

53.955

100

0.54
  pilM Legionella pneumophila strain ERS1305867

49.577

100

0.497