Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LXG94_RS21980 Genome accession   NZ_CP090179
Coordinates   2510798..2511523 (+) Length   241 a.a.
NCBI ID   WP_033007443.1    Uniprot ID   A0A8B3DV78
Organism   Vibrio harveyi strain XH2145     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2505798..2516523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXG94_RS21965 (LXG94_21965) - 2506923..2509244 (+) 2322 WP_038897702.1 Tex family protein -
  LXG94_RS21970 (LXG94_21970) - 2509348..2509812 (-) 465 WP_038897701.1 hypothetical protein -
  LXG94_RS21975 (LXG94_21975) bioH 2509949..2510713 (-) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  LXG94_RS21980 (LXG94_21980) comF 2510798..2511523 (+) 726 WP_033007443.1 ComF family protein Machinery gene
  LXG94_RS21985 (LXG94_21985) nfuA 2511621..2512205 (+) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  LXG94_RS21990 (LXG94_21990) nudE 2512381..2512947 (+) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  LXG94_RS21995 (LXG94_21995) cysQ 2512995..2513822 (+) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LXG94_RS22000 (LXG94_22000) - 2513992..2514753 (-) 762 WP_005448490.1 type II secretion system protein N -
  LXG94_RS22005 (LXG94_22005) - 2514755..2515246 (-) 492 WP_005448492.1 type II secretion system protein M -
  LXG94_RS22010 (LXG94_22010) gspL 2515254..2516456 (-) 1203 WP_038897941.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27681.74 Da        Isoelectric Point: 8.4332

>NTDB_id=640973 LXG94_RS21980 WP_033007443.1 2510798..2511523(+) (comF) [Vibrio harveyi strain XH2145]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KIFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=640973 LXG94_RS21980 WP_033007443.1 2510798..2511523(+) (comF) [Vibrio harveyi strain XH2145]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCTTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGTGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGATATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B3DV78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.701

100

0.917
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469