Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LXG94_RS18185 Genome accession   NZ_CP090179
Coordinates   1697509..1697808 (-) Length   99 a.a.
NCBI ID   WP_005446580.1    Uniprot ID   A0A3A1QB85
Organism   Vibrio harveyi strain XH2145     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1692509..1702808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXG94_RS18160 (LXG94_18160) - 1692927..1694141 (+) 1215 WP_005446588.1 pyridoxal phosphate-dependent aminotransferase -
  LXG94_RS18165 (LXG94_18165) yfbR 1694225..1694809 (+) 585 WP_026000131.1 5'-deoxynucleotidase -
  LXG94_RS18170 (LXG94_18170) - 1694813..1696147 (+) 1335 WP_045490409.1 anti-phage deoxyguanosine triphosphatase -
  LXG94_RS18175 (LXG94_18175) - 1696184..1696801 (-) 618 WP_038898573.1 tRNA-uridine aminocarboxypropyltransferase -
  LXG94_RS18180 (LXG94_18180) rrtA 1696805..1697356 (+) 552 WP_005446582.1 rhombosortase -
  LXG94_RS18185 (LXG94_18185) comEA 1697509..1697808 (-) 300 WP_005446580.1 helix-hairpin-helix domain-containing protein Machinery gene
  LXG94_RS18190 (LXG94_18190) ppiD 1697954..1699813 (-) 1860 WP_009698342.1 peptidylprolyl isomerase -
  LXG94_RS18195 (LXG94_18195) - 1700029..1700301 (-) 273 WP_005430934.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10936.80 Da        Isoelectric Point: 8.9385

>NTDB_id=640965 LXG94_RS18185 WP_005446580.1 1697509..1697808(-) (comEA) [Vibrio harveyi strain XH2145]
MKWMLTLCLLLLAPMSWAEESKSANTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=640965 LXG94_RS18185 WP_005446580.1 1697509..1697808(-) (comEA) [Vibrio harveyi strain XH2145]
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGGCTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAAAAGAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A1QB85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

82.828

100

0.828
  comEA Vibrio parahaemolyticus RIMD 2210633

75.758

100

0.758
  comEA Vibrio cholerae C6706

56.566

100

0.566
  comEA Vibrio cholerae strain A1552

56.566

100

0.566
  comE1/comEA Haemophilus influenzae Rd KW20

41.071

100

0.465
  comEA/comE1 Glaesserella parasuis strain SC1401

39.252

100

0.424
  comEA Legionella pneumophila str. Paris

37.374

100

0.374
  comEA Legionella pneumophila strain ERS1305867

37.374

100

0.374