Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LW858_RS12135 Genome accession   NZ_CP090081
Coordinates   2397778..2398359 (-) Length   193 a.a.
NCBI ID   WP_001092373.1    Uniprot ID   -
Organism   Bacillus cereus strain CPT56D-587-MTF     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2392778..2403359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW858_RS12100 (LW858_12100) - 2392795..2393631 (-) 837 WP_000556966.1 PP2C family serine/threonine-protein phosphatase -
  LW858_RS12105 (LW858_12105) - 2393615..2393913 (-) 299 Protein_2384 hypothetical protein -
  LW858_RS12110 (LW858_12110) - 2394020..2394187 (-) 168 WP_000508401.1 hypothetical protein -
  LW858_RS12115 (LW858_12115) - 2394405..2394617 (+) 213 WP_065382618.1 hypothetical protein -
  LW858_RS12120 (LW858_12120) - 2394671..2395507 (-) 837 WP_001084759.1 proline/glycine betaine ABC transporter permease -
  LW858_RS12125 (LW858_12125) - 2395500..2396705 (-) 1206 WP_000370606.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  LW858_RS12130 (LW858_12130) - 2396877..2397734 (+) 858 WP_001227613.1 glycine betaine ABC transporter substrate-binding protein -
  LW858_RS12135 (LW858_12135) clpP 2397778..2398359 (-) 582 WP_001092373.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  LW858_RS12140 (LW858_12140) - 2398381..2399067 (-) 687 WP_000337511.1 RNA polymerase subunit sigma-70 -
  LW858_RS12145 (LW858_12145) - 2399210..2399530 (+) 321 WP_001125388.1 2Fe-2S iron-sulfur cluster-binding protein -
  LW858_RS12150 (LW858_12150) rpiA 2399535..2400197 (+) 663 WP_001049989.1 ribose 5-phosphate isomerase A -
  LW858_RS12155 (LW858_12155) - 2400309..2400743 (+) 435 WP_233936413.1 GNAT family N-acetyltransferase -
  LW858_RS12160 (LW858_12160) - 2400871..2402205 (-) 1335 WP_233936414.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21266.53 Da        Isoelectric Point: 5.0776

>NTDB_id=640602 LW858_RS12135 WP_001092373.1 2397778..2398359(-) (clpP) [Bacillus cereus strain CPT56D-587-MTF]
MNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKVYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=640602 LW858_RS12135 WP_001092373.1 2397778..2398359(-) (clpP) [Bacillus cereus strain CPT56D-587-MTF]
ATGAATACAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAGCGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGCATTATTATTATCGGCTCAGAAATTAACGATCAAGTAGCGAGTAGTGTCGTAGCGCAATTATTATTTTTAGAAGCAG
AAGATGCAGAAAAAGATATATATTTATACATCAATAGCCCAGGAGGTTCAACGACAGCAGGTTTTGCAATATTAGATACG
ATGAATTTAATTAAACCAGATGTGCAAACGCTATGCATGGGCTTTGCGGCATCATTCGGTGCATTGTTATTATTATCAGG
AGCAAAAGGAAAACGGTTTGCGCTTCCTAACAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAAGGGCAAGCAA
CAGAAATTGAAATAACTGCGAAAAGAATATTAAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGCCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGTATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.586

98.964

0.679
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.725

97.927

0.663
  clpP Streptococcus thermophilus LMD-9

55.729

99.482

0.554
  clpP Streptococcus pneumoniae Rx1

55.729

99.482

0.554
  clpP Streptococcus pneumoniae D39

55.729

99.482

0.554
  clpP Streptococcus pneumoniae TIGR4

55.729

99.482

0.554
  clpP Streptococcus pneumoniae R6

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMG 18311

55.729

99.482

0.554
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus mutans UA159

54.497

97.927

0.534
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

97.927

0.518
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.794

97.927

0.497