Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LXF01_RS01515 Genome accession   NZ_CP090067
Coordinates   322730..324844 (+) Length   704 a.a.
NCBI ID   WP_233945411.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317730..329844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS01495 (LXF01_01495) comM 319681..320739 (+) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene
  LXF01_RS01500 (LXF01_01500) pilN 320739..321425 (+) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  LXF01_RS01505 (LXF01_01505) pilO 321422..322144 (+) 723 WP_233944944.1 type 4a pilus biogenesis protein PilO Machinery gene
  LXF01_RS01510 (LXF01_01510) pilP 322141..322668 (+) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  LXF01_RS01515 (LXF01_01515) pilQ 322730..324844 (+) 2115 WP_233945411.1 type IV pilus secretin PilQ Machinery gene
  LXF01_RS01520 (LXF01_01520) aroK 324881..325426 (+) 546 WP_078189378.1 shikimate kinase AroK -
  LXF01_RS01525 (LXF01_01525) aroB 325441..326523 (+) 1083 WP_180173216.1 3-dehydroquinate synthase -
  LXF01_RS01530 (LXF01_01530) - 326531..327370 (+) 840 WP_180173217.1 hypothetical protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 76601.63 Da        Isoelectric Point: 6.2157

>NTDB_id=640534 LXF01_RS01515 WP_233945411.1 322730..324844(+) (pilQ) [Acinetobacter sp. SH20PTE14]
MNHVFRQFSMGAVAMAMMQVANAQVSVTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLDQPSRLVLDFDKAQQNLKQSSI
PVATAEASTVDVSSDAQRARLTVNLANAGAFTTRVEGNTFILKINSAQAANYVQPVAQRQQQGISNIGFHRGSNGEGQVV
VDLLGGNTPVDVQQQGSKVVIRTLGNKVPAHLTRRLNVNDFATPVATVDAHNDGGNGVITIQSTGSYEYMAYQTDNKLTV
SLKRPEDKNPLRPKAANHYIGKKISLDFQDIEVRRVLQLLADFTEINMVAADTVQGNITLRLKDVPWDQALDIVLKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKALRQSMKLAPLQTEYLTLSYAKAAEIEKLITQSKTAGNSGSSNNSNNADDDRGN
LLSPRGTISADTRTNTLIINDTAQNIDQIRKMVDLLDVSVKQVMVEARIVKASTDFTKEMGVKWGLLSQGINQNDHLLVG
GSDTTLWDLKTPDDDGKYTIQRPSNLNVDLGVTTAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTADKQP
AKVASGQEIPYQTTTGTGSNATSSTEFKEALLSLDVTPSITPDGKVQMKLNIKSDSPAGYAQNGEIILNKNEINTDVLVN
NGETVVLGGIFNQETQSKQTKVPFLGDIPYVGRLFRKDMKSDAKNELLIFVTPRIVNDSVTRNH

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=640534 LXF01_RS01515 WP_233945411.1 322730..324844(+) (pilQ) [Acinetobacter sp. SH20PTE14]
ATGAATCATGTGTTTCGTCAGTTTTCGATGGGGGCTGTTGCAATGGCGATGATGCAAGTTGCCAATGCTCAGGTGAGTGT
AACCAATGTGGTACCAATGCAAATTCCAGGTCAAGGGACTGAAATTCGCGTGATGTTTAATGGCTTGCCGCCACAACCAC
AAGCTTATCAACTCGATCAACCATCACGACTAGTTTTAGATTTTGATAAAGCACAGCAAAATTTAAAACAAAGTTCAATT
CCTGTGGCAACGGCTGAAGCGAGCACTGTGGATGTGAGTTCGGATGCACAACGTGCGCGCTTAACTGTGAATTTAGCCAA
TGCTGGCGCTTTTACCACGCGTGTTGAAGGTAATACCTTTATTTTAAAAATTAACTCTGCACAAGCTGCAAATTATGTAC
AGCCTGTAGCACAACGTCAGCAACAGGGCATCTCAAATATTGGTTTCCACCGTGGTTCTAATGGTGAAGGTCAAGTTGTT
GTTGATTTACTGGGTGGAAACACCCCTGTTGATGTTCAACAGCAAGGCAGTAAAGTGGTGATCCGTACTTTAGGCAATAA
AGTACCTGCACATTTGACTCGCCGTTTAAATGTCAATGATTTTGCAACACCTGTTGCAACGGTAGATGCACATAATGATG
GCGGTAATGGTGTGATTACCATTCAGTCGACGGGTAGCTATGAATATATGGCGTACCAAACTGATAATAAATTAACGGTA
AGTTTGAAACGTCCGGAAGATAAGAATCCATTACGTCCTAAAGCTGCCAATCATTATATCGGTAAGAAGATTTCATTAGA
CTTCCAAGATATTGAAGTACGTCGTGTGCTGCAACTTTTGGCTGATTTCACTGAAATCAATATGGTTGCTGCTGATACGG
TGCAAGGGAATATTACACTTCGCTTAAAAGATGTGCCTTGGGATCAAGCACTAGATATCGTATTGAAAACCAAGAATTTG
GACAAACGTCGTAATGGTAATGTGATTTGGATTGCGCCTGTATCTGAGTTGATTAAAGCGGAAGAAGAAGAAGCAAAAGC
CTTACGTCAAAGTATGAAGTTGGCACCATTACAGACTGAATATTTAACGCTGAGCTATGCAAAAGCAGCTGAGATAGAGA
AGCTGATTACGCAGTCTAAAACTGCGGGTAATAGCGGTTCGTCAAATAATAGTAATAATGCTGATGATGATCGGGGTAAT
TTGTTAAGTCCACGCGGAACGATTTCTGCAGATACGCGTACAAATACACTGATTATTAATGATACCGCGCAAAACATTGA
TCAGATTCGTAAGATGGTGGATTTGCTTGATGTATCAGTCAAGCAGGTCATGGTTGAAGCACGTATTGTAAAAGCATCTA
CTGACTTTACCAAAGAAATGGGTGTGAAATGGGGTCTCTTGTCTCAAGGGATTAACCAAAATGACCATTTATTGGTGGGT
GGTAGTGATACTACGCTTTGGGACTTAAAAACACCGGATGATGATGGGAAATATACTATTCAACGTCCAAGTAACTTAAA
CGTGGACTTAGGGGTGACTACCGCAGGTGCCAGTCGAATTGCGTTCGGCTTAATTAGTCTTTCTGATTTTATGTTGGATT
TAGAGCTTTCTGCTTTACAAGCGGATGGTTATGGTGAAGTCATTTCTACACCAAAGGTACTGACAGCGGATAAACAACCC
GCCAAAGTTGCATCAGGTCAAGAAATTCCATATCAAACCACAACGGGTACAGGTTCAAATGCGACTTCTTCTACCGAGTT
TAAAGAAGCTTTATTAAGTCTGGATGTCACGCCTAGCATTACTCCAGATGGTAAAGTGCAAATGAAGCTGAATATCAAGA
GCGACTCACCAGCAGGATATGCACAAAATGGTGAAATCATCCTGAATAAAAATGAAATTAATACCGATGTCTTAGTCAAC
AATGGTGAAACTGTTGTGCTCGGCGGTATTTTTAATCAGGAAACACAAAGTAAGCAAACTAAAGTACCGTTCTTAGGTGA
TATTCCTTATGTGGGTCGCTTATTCCGTAAAGATATGAAAAGCGATGCAAAAAATGAGTTACTGATTTTTGTTACTCCGC
GAATTGTTAATGACAGTGTTACGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(538-696)

AMIN domain (AMIN)

(40-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.792

100

0.767
  pilQ Acinetobacter baumannii strain A118

74.654

100

0.766
  comQ Acinetobacter baylyi ADP1

73.876

100

0.747
  pilQ Pseudomonas aeruginosa PAK

41.679

99.858

0.416