Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LXF01_RS01510 Genome accession   NZ_CP090067
Coordinates   322141..322668 (+) Length   175 a.a.
NCBI ID   WP_078192530.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317141..327668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS01495 (LXF01_01495) comM 319681..320739 (+) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene
  LXF01_RS01500 (LXF01_01500) pilN 320739..321425 (+) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  LXF01_RS01505 (LXF01_01505) pilO 321422..322144 (+) 723 WP_233944944.1 type 4a pilus biogenesis protein PilO Machinery gene
  LXF01_RS01510 (LXF01_01510) pilP 322141..322668 (+) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  LXF01_RS01515 (LXF01_01515) pilQ 322730..324844 (+) 2115 WP_233945411.1 type IV pilus secretin PilQ Machinery gene
  LXF01_RS01520 (LXF01_01520) aroK 324881..325426 (+) 546 WP_078189378.1 shikimate kinase AroK -
  LXF01_RS01525 (LXF01_01525) aroB 325441..326523 (+) 1083 WP_180173216.1 3-dehydroquinate synthase -
  LXF01_RS01530 (LXF01_01530) - 326531..327370 (+) 840 WP_180173217.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19253.35 Da        Isoelectric Point: 7.1660

>NTDB_id=640533 LXF01_RS01510 WP_078192530.1 322141..322668(+) (pilP) [Acinetobacter sp. SH20PTE14]
MKMNKLALSVMVGFVLAGCESRIDVVNQEMANIRNQAPLAIEPAPDFVPVETFNYAAHSLKSPFLPSSLAAELKIMAGKR
VYPNLSRQPQPLESYALETLNMKGSMRNQSGQILALIQTPDGEVERIQRGSYMGLNHGRVVNITPTQIDLIEIIPDGREG
YVERPRSLILIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=640533 LXF01_RS01510 WP_078192530.1 322141..322668(+) (pilP) [Acinetobacter sp. SH20PTE14]
ATGAAAATGAATAAATTGGCACTTTCTGTGATGGTTGGATTTGTATTGGCTGGTTGTGAATCACGTATTGATGTGGTCAA
TCAAGAGATGGCAAATATACGCAATCAAGCGCCACTAGCGATTGAACCTGCGCCAGATTTTGTACCTGTCGAGACTTTTA
ATTATGCGGCGCATTCTTTAAAAAGTCCGTTCTTGCCAAGTTCATTGGCAGCAGAACTTAAAATCATGGCAGGTAAGCGT
GTTTATCCAAACTTGAGCCGTCAGCCTCAACCTTTGGAGAGTTATGCACTCGAAACCCTGAATATGAAGGGTAGTATGCG
TAACCAATCTGGGCAAATATTAGCCTTGATTCAGACACCTGATGGTGAAGTTGAGCGTATTCAACGTGGAAGTTATATGG
GGCTCAATCATGGTCGAGTGGTAAATATTACCCCGACTCAAATTGATTTGATTGAGATTATTCCGGATGGGCGAGAAGGA
TATGTAGAGCGTCCTAGAAGTCTCATATTAATTGGACCAGCACCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76

100

0.76
  comL Acinetobacter baylyi ADP1

68.023

98.286

0.669