Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LXF01_RS01500 Genome accession   NZ_CP090067
Coordinates   320739..321425 (+) Length   228 a.a.
NCBI ID   WP_078189382.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315739..326425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS01485 (LXF01_01485) - 316118..316921 (+) 804 WP_180106972.1 methyltransferase domain-containing protein -
  LXF01_RS01490 (LXF01_01490) ponA 316975..319515 (-) 2541 WP_233944943.1 penicillin-binding protein PBP1a -
  LXF01_RS01495 (LXF01_01495) comM 319681..320739 (+) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene
  LXF01_RS01500 (LXF01_01500) pilN 320739..321425 (+) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  LXF01_RS01505 (LXF01_01505) pilO 321422..322144 (+) 723 WP_233944944.1 type 4a pilus biogenesis protein PilO Machinery gene
  LXF01_RS01510 (LXF01_01510) pilP 322141..322668 (+) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  LXF01_RS01515 (LXF01_01515) pilQ 322730..324844 (+) 2115 WP_233945411.1 type IV pilus secretin PilQ Machinery gene
  LXF01_RS01520 (LXF01_01520) aroK 324881..325426 (+) 546 WP_078189378.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25390.94 Da        Isoelectric Point: 5.7844

>NTDB_id=640531 LXF01_RS01500 WP_078189382.1 320739..321425(+) (pilN) [Acinetobacter sp. SH20PTE14]
MAKINLLPWRDELREKRKKEFIALCIGAFLIGVIGVGLTWLYFDHKLKDQEQANQLIISHNQNLDVQLKSLDGLQEQRNA
IIERMKLIQGLQGQRPIAVHLVDELVRVTPANMYITKFERNGDKFMIEGRAESPNTVADLLRNLEASPWYRNAFMSSFLV
AEEKKDKAPTSVVPRVEESYGAFTVTADLEQIAQPTINDPAANAGQSASSAQTSDAQTAATPTPEAAK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=640531 LXF01_RS01500 WP_078189382.1 320739..321425(+) (pilN) [Acinetobacter sp. SH20PTE14]
ATGGCAAAAATTAACTTGCTCCCTTGGCGTGATGAGCTAAGAGAGAAACGAAAAAAAGAATTTATTGCACTTTGTATTGG
GGCTTTCTTAATTGGGGTAATTGGGGTTGGTTTAACATGGTTGTACTTTGATCACAAATTAAAAGATCAAGAACAAGCGA
ACCAATTGATTATCAGTCATAACCAAAACCTAGATGTTCAATTAAAGTCTTTGGATGGTTTACAAGAACAGCGTAATGCT
ATTATTGAACGAATGAAGTTGATTCAAGGCTTACAAGGTCAACGTCCAATCGCTGTACATCTTGTAGATGAATTGGTTCG
TGTGACACCTGCCAATATGTACATCACAAAATTTGAACGTAATGGCGACAAATTTATGATCGAAGGGCGTGCGGAAAGTC
CAAACACTGTTGCAGATCTACTGCGTAATTTGGAAGCATCACCTTGGTATCGTAATGCCTTCATGAGCTCATTCCTTGTG
GCGGAAGAGAAAAAAGACAAAGCACCGACGTCAGTGGTTCCTCGCGTAGAAGAATCTTATGGTGCATTTACTGTGACTGC
TGATTTGGAGCAAATTGCGCAGCCGACCATTAATGATCCAGCAGCAAATGCAGGACAGTCAGCTTCATCGGCGCAAACAT
CTGACGCACAAACAGCAGCAACACCAACTCCGGAGGCTGCAAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.014

93.421

0.645
  comN Acinetobacter baylyi ADP1

71.503

84.649

0.605