NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	PALA20_RS21820	Genome accession	NZ_CP107064
Coordinates	4570929..4571570 (+)	Length	213 a.a.
NCBI ID	WP_003087922.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain PALA20
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4565929..4576570

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA20_RS21805 (PALA20_04313)	parS	4567299..4568585 (-)	1287	WP_003087912.1	sensor histidine kinase ParS	-
PALA20_RS21810 (PALA20_04314)	parR	4568586..4569293 (-)	708	WP_003087915.1	response regulator transcription factor ParR	-
PALA20_RS21815 (PALA20_04315)	tig	4569525..4570835 (+)	1311	WP_003087920.1	trigger factor	-
PALA20_RS21820 (PALA20_04316)	clpP	4570929..4571570 (+)	642	WP_003087922.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
PALA20_RS21825 (PALA20_04317)	clpX	4571675..4572955 (+)	1281	WP_003087924.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
PALA20_RS21830 (PALA20_04318)	lon	4573087..4575483 (+)	2397	WP_003087926.1	endopeptidase La	-
PALA20_RS21835 (PALA20_04319)	hupB	4575619..4575891 (+)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-

Sequence

Protein

Download Length: 213 a.a. Molecular weight: 23601.27 Da Isoelectric Point: 6.6019

                                >NTDB_id=640417 PALA20_RS21820 WP_003087922.1 4570929..4571570(+) (clpP) [Pseudomonas aeruginosa strain PALA20]

MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL

FIKERLNQILAHHTRQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide

Download Length: 642 bp

                                >NTDB_id=640417 PALA20_RS21820 WP_003087922.1 4570929..4571570(+) (clpP) [Pseudomonas aeruginosa strain PALA20]

ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC

CGCCCGCGGCGAGCGCGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG

ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC

AACTCGCCGGGTGGCTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC

CTGTATCGGTCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATT

CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC

TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCCGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG

TGACCGCTTTATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT

AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.188	90.141	0.606
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.789	89.202	0.587
clpP	Lactococcus lactis subsp. cremoris KW2	53.299	92.488	0.493
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.777	92.488	0.479
clpP	Streptococcus mutans UA159	50	92.019	0.46
clpP	Streptococcus pneumoniae R6	50.256	91.549	0.46
clpP	Streptococcus pneumoniae TIGR4	50.256	91.549	0.46
clpP	Streptococcus pyogenes JRS4	50.256	91.549	0.46
clpP	Streptococcus pyogenes MGAS315	50.256	91.549	0.46
clpP	Streptococcus thermophilus LMG 18311	50.256	91.549	0.46
clpP	Streptococcus thermophilus LMD-9	50.256	91.549	0.46
clpP	Streptococcus pneumoniae Rx1	50.256	91.549	0.46
clpP	Streptococcus pneumoniae D39	50.256	91.549	0.46

Detailed information NTG0640417