Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   LV497_RS06290 Genome accession   NZ_CP090007
Coordinates   1374596..1375495 (+) Length   299 a.a.
NCBI ID   WP_245084224.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369596..1380495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS06270 (LV497_06270) trkA 1370761..1372110 (-) 1350 WP_014633874.1 Trk system potassium transporter TrkA -
  LV497_RS06275 (LV497_06275) - 1372388..1372897 (+) 510 WP_118172046.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  LV497_RS06280 (LV497_06280) - 1373208..1373765 (+) 558 WP_037598980.1 ECF transporter S component -
  LV497_RS06285 (LV497_06285) - 1373768..1374418 (+) 651 WP_048673883.1 phosphatase PAP2 family protein -
  LV497_RS06290 (LV497_06290) comR 1374596..1375495 (+) 900 WP_245084224.1 XRE family transcriptional regulator Regulator
  LV497_RS06295 (LV497_06295) comA 1375670..1377766 (+) 2097 WP_245084227.1 peptide cleavage/export ABC transporter Regulator
  LV497_RS06300 (LV497_06300) - 1377876..1378208 (+) 333 WP_245084230.1 DUF805 domain-containing protein -
  LV497_RS06305 (LV497_06305) - 1378260..1379654 (-) 1395 WP_245084233.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35155.61 Da        Isoelectric Point: 5.3732

>NTDB_id=640135 LV497_RS06290 WP_245084224.1 1374596..1375495(+) (comR) [Streptococcus salivarius strain SALI-10]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMADLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKEAAENYDKAIMFASVLEDSVLEESIRAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=640135 LV497_RS06290 WP_245084224.1 1374596..1375495(+) (comR) [Streptococcus salivarius strain SALI-10]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGTCAGTTAATTCGTATTGAAAAAGGGGAGTCACTCCCGTCTTTGGATAAATTATCTT
ATATCGCCAAACGTCTAGGAAAAAATATGGCCGATCTATTGGATCATGACAATATTACTATCCCTGACGAATACTACGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTATAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAGGT
CTACGAGAAATTCTTTGAACTTCTCCCAGAAGAAGAATTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
GTTGGGAAGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTTTATGGAAGAAAACAGTATGATAAAAAACTTTTTGAAAGAAT
CGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGACGATGTTTATAATATTGTTTTATTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCATAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCCAAATATGAACTTCTTCATAAAGGAAACAAGAAAGAGGC
TGCAGAAAATTATGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTTTTAGAGGAAAGTATAAGGGCAGGAA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

98.662

100

0.987
  comR Streptococcus salivarius SK126

98.662

100

0.987
  comR Streptococcus thermophilus LMG 18311

94.649

100

0.946
  comR Streptococcus thermophilus LMD-9

93.98

100

0.94
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

41.806

100

0.418