Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LU301_RS01045 Genome accession   NZ_CP089978
Coordinates   206597..208723 (+) Length   708 a.a.
NCBI ID   WP_305271712.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 201597..213723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS01025 (LU301_01020) comM 203385..204443 (+) 1059 WP_305271705.1 pilus assembly protein PilM Machinery gene
  LU301_RS01030 (LU301_01025) - 204443..205135 (+) 693 Protein_202 PilN domain-containing protein -
  LU301_RS01035 (LU301_01030) pilO 205333..206031 (+) 699 WP_305271707.1 type 4a pilus biogenesis protein PilO Machinery gene
  LU301_RS01040 (LU301_01035) pilP 206031..206570 (+) 540 WP_305271710.1 pilus assembly protein PilP Machinery gene
  LU301_RS01045 (LU301_01040) pilQ 206597..208723 (+) 2127 WP_305271712.1 type IV pilus secretin PilQ Machinery gene
  LU301_RS01050 (LU301_01045) aroK 208816..209379 (+) 564 WP_305271714.1 shikimate kinase AroK -
  LU301_RS01055 (LU301_01050) aroB 209463..210545 (+) 1083 WP_305271716.1 3-dehydroquinate synthase -
  LU301_RS01060 (LU301_01055) - 210550..211338 (+) 789 WP_305271718.1 hypothetical protein -
  LU301_RS01065 (LU301_01060) - 211397..212230 (-) 834 WP_305271721.1 class I SAM-dependent methyltransferase -
  LU301_RS01070 (LU301_01065) - 212224..213051 (-) 828 WP_305271723.1 undecaprenyl-diphosphate phosphatase -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76470.01 Da        Isoelectric Point: 9.6647

>NTDB_id=639617 LU301_RS01045 WP_305271712.1 206597..208723(+) (pilQ) [Moraxella sp. ZY210820]
MNSLVRQFSLGAVALAMVQVANAQVNITNIAPVAVADGTEIRVMFNGLPPQPQAYQLNQPTRLLLDFPQVGQTVGKKQIP
VTGNEVSAVDLETDAQRSRLTVNIKSAAGFTSRVEGNTFILKINNAKAQQAQVAKQAAVPKMGVANINFQKGTGKNEGVV
VVDLLAAKTPLDVQQQGSKVVIRTRGSKIPSQLVRRLNTAEFATPVTAIDAYNDGSNGVITIQTEGGYDFTSYQSDKRLT
LNFKRPVEQVFKAPTPTYTGKKISLQFQDIGVREVLQLLGDFTGTNIVAADNVQGNITLNLRDVPADQALDVILKTKNLD
KRRTGNVIWVAPAADLIKAEKEEADAIAQGIKLAPIQTEYMRLSYAKASVIGKFLDDARQEARKYANGGNSDTTIGNSLS
LDSLLSARGSAVADDRTNTLVINDTAKNLDKIRKMIELLDVPVKQVMVEARVVRATTDFSKELGVSWGILGNRDNGRFKV
GGSQTTLWDLRTPTTNSTGGVTYTIQRPSNLNVDLGVTTTGAAKIAFGLLNLSDFMLDLELSALQADGRGEVISTPKVLT
ADKQKATIKTGQEIPYQTVSSSGGQTTVTTEFKEAVLQLDVTPSITPEGKVQMQLNVTNDSLAGYANNGEAILNKNEVNT
NVLVNDGETVVLGGVFEQINQNQVNKVPLLGDLPAVGRLFRQDVKKENKRELLIFVTPRIINDNSLRN

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=639617 LU301_RS01045 WP_305271712.1 206597..208723(+) (pilQ) [Moraxella sp. ZY210820]
ATGAATTCTTTAGTTCGTCAATTTTCATTAGGTGCTGTTGCTTTAGCAATGGTACAGGTTGCTAACGCACAAGTAAATAT
TACCAATATTGCACCCGTCGCTGTCGCAGACGGTACTGAAATCCGTGTGATGTTTAATGGTTTACCACCACAACCACAAG
CATATCAGTTAAATCAGCCAACACGTCTACTTTTGGATTTTCCACAAGTAGGTCAAACGGTAGGCAAAAAACAAATTCCT
GTTACAGGTAATGAAGTTTCTGCTGTTGATTTAGAAACAGATGCTCAACGCTCACGTTTAACAGTAAATATCAAAAGTGC
AGCTGGTTTTACCAGTCGTGTAGAAGGTAATACTTTTATTTTAAAAATTAATAATGCTAAAGCTCAACAAGCACAGGTGG
CTAAACAAGCTGCAGTACCTAAAATGGGCGTGGCAAATATTAATTTCCAAAAAGGCACTGGAAAAAATGAAGGTGTTGTT
GTTGTTGATTTATTAGCAGCTAAAACACCGCTTGATGTACAACAACAAGGTTCTAAAGTTGTTATTCGTACACGTGGTAG
CAAAATTCCAAGCCAGTTGGTACGCCGTTTGAATACTGCGGAGTTTGCGACACCAGTAACCGCGATTGATGCTTATAATG
ATGGTTCGAATGGTGTGATTACTATTCAAACTGAAGGTGGCTATGACTTTACTTCGTATCAATCAGATAAACGTTTAACT
TTAAATTTCAAACGTCCTGTAGAGCAAGTATTTAAAGCACCTACACCAACCTATACAGGAAAGAAAATTTCTTTACAATT
CCAAGATATTGGTGTGCGTGAAGTATTACAGTTATTAGGTGATTTTACAGGTACCAATATTGTTGCAGCTGATAATGTAC
AAGGTAATATCACTTTAAATTTAAGAGATGTTCCTGCTGATCAAGCATTAGATGTTATCTTAAAGACAAAAAATCTTGAT
AAACGTCGTACTGGTAATGTCATTTGGGTAGCACCAGCAGCAGATCTTATTAAAGCCGAAAAAGAAGAAGCAGATGCCAT
TGCTCAAGGTATCAAACTTGCACCGATTCAAACTGAATATATGCGTTTAAGTTATGCTAAAGCAAGTGTGATTGGTAAAT
TCTTAGATGATGCACGTCAAGAAGCACGTAAATATGCTAATGGTGGTAATTCAGATACTACAATTGGTAATAGTTTGTCT
TTAGATAGCTTATTAAGTGCTCGTGGTAGTGCAGTTGCAGATGACCGTACCAATACCTTAGTCATCAACGATACTGCAAA
AAACCTAGATAAAATTCGTAAAATGATAGAATTACTTGATGTACCAGTTAAACAAGTAATGGTTGAAGCACGTGTAGTAC
GTGCAACCACGGATTTTAGTAAAGAGTTAGGTGTGTCTTGGGGGATTTTAGGTAATCGTGATAATGGGCGTTTTAAAGTT
GGTGGTAGTCAAACTACCCTTTGGGATTTAAGGACTCCAACTACGAATAGTACAGGTGGAGTAACTTATACTATTCAACG
TCCTTCTAATTTAAATGTAGATTTAGGTGTAACTACAACTGGGGCTGCAAAAATAGCATTTGGTTTGTTAAATTTATCTG
ATTTTATGCTCGATTTAGAATTATCAGCTTTACAAGCTGATGGTCGTGGTGAAGTAATTTCAACACCAAAAGTCTTAACT
GCGGATAAACAAAAAGCAACCATTAAAACAGGTCAAGAGATTCCTTATCAAACAGTGTCATCTTCTGGAGGACAAACAAC
AGTAACTACTGAGTTTAAAGAAGCTGTTCTACAATTAGATGTTACACCGAGTATCACGCCTGAAGGTAAAGTACAAATGC
AATTGAATGTTACCAATGACTCACTTGCTGGCTATGCAAATAATGGTGAAGCGATTTTAAATAAAAATGAAGTGAATACC
AATGTCTTAGTTAATGATGGTGAAACTGTCGTGCTAGGTGGTGTGTTTGAACAAATTAACCAAAATCAAGTTAATAAAGT
ACCATTATTGGGTGATTTACCTGCTGTTGGTCGCTTGTTCCGTCAAGACGTGAAGAAAGAAAATAAACGTGAGTTATTAA
TTTTCGTAACACCACGAATTATTAATGACAACAGTTTAAGAAATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(286-332)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-445)

AMIN domain (AMIN)

(36-110)

Bacterial type II and III secretion system protein (Secretin)

(543-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

61.348

100

0.63
  pilQ Acinetobacter baumannii strain A118

61.21

100

0.629
  comQ Acinetobacter baylyi ADP1

62.272

100

0.627
  pilQ Pseudomonas aeruginosa PAK

38.874

100

0.41