Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LU301_RS01025 Genome accession   NZ_CP089978
Coordinates   203385..204443 (+) Length   352 a.a.
NCBI ID   WP_305271705.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 198385..209443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS01015 (LU301_01010) - 198967..200190 (-) 1224 WP_305271701.1 hypothetical protein -
  LU301_RS01020 (LU301_01015) - 200493..203216 (-) 2724 WP_305271703.1 penicillin-binding protein 1A -
  LU301_RS01025 (LU301_01020) comM 203385..204443 (+) 1059 WP_305271705.1 pilus assembly protein PilM Machinery gene
  LU301_RS01030 (LU301_01025) - 204443..205135 (+) 693 Protein_202 PilN domain-containing protein -
  LU301_RS01035 (LU301_01030) pilO 205333..206031 (+) 699 WP_305271707.1 type 4a pilus biogenesis protein PilO Machinery gene
  LU301_RS01040 (LU301_01035) pilP 206031..206570 (+) 540 WP_305271710.1 pilus assembly protein PilP Machinery gene
  LU301_RS01045 (LU301_01040) pilQ 206597..208723 (+) 2127 WP_305271712.1 type IV pilus secretin PilQ Machinery gene
  LU301_RS01050 (LU301_01045) aroK 208816..209379 (+) 564 WP_305271714.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38356.36 Da        Isoelectric Point: 4.4831

>NTDB_id=639614 LU301_RS01025 WP_305271705.1 203385..204443(+) (comM) [Moraxella sp. ZY210820]
MLKLKRKPTNGIIGVDITSTSVKVLELTKQNGRYWVENYASVELPEGSVVEKNIVNTDAVGEALEKAIEKADTRTVNAAT
AIPNSLVINKVIEMDADMTDDEREVQIRMEAEQYIPFSLDEANLDFAVLDEPARTAGKVNVALVATRTENVDARVEVLNV
AGLTPKVVDTEGYALERALATIANTFTVNVNILGVLDIGHSTTTFSVLQNGKVIYTREQSFGGKALTQAIQNHYGIDFKE
ANEAKIEGRLPDDYEAEVLEPFLEQVEQQASRALQFFQSSSTVGEIDHLLLIGGSANLPGLARKLQGNLGYRTTVANPFV
QMSFANHIDTKKIENDAAGLLTVCGLALRGFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=639614 LU301_RS01025 WP_305271705.1 203385..204443(+) (comM) [Moraxella sp. ZY210820]
GTGCTCAAGTTAAAACGTAAGCCGACGAACGGCATAATTGGAGTGGATATTACTTCGACTTCAGTTAAAGTTCTTGAACT
CACGAAACAAAATGGTCGATACTGGGTAGAAAACTATGCCAGTGTTGAATTGCCAGAAGGTAGTGTCGTTGAGAAAAATA
TTGTAAATACAGATGCTGTAGGTGAAGCTTTAGAAAAAGCGATTGAGAAAGCTGATACACGTACAGTAAATGCTGCCACA
GCAATCCCAAATTCGCTAGTAATTAATAAAGTCATTGAAATGGATGCAGATATGACAGATGATGAGCGGGAAGTACAAAT
TCGTATGGAAGCAGAGCAGTATATTCCATTCTCATTAGATGAAGCAAATTTAGATTTTGCGGTTTTAGATGAGCCTGCAC
GAACTGCGGGCAAAGTTAATGTCGCACTTGTTGCCACACGTACTGAAAATGTGGACGCTCGTGTTGAAGTATTGAACGTT
GCAGGTTTAACACCAAAAGTCGTTGATACAGAAGGCTATGCTTTAGAGCGTGCTTTAGCGACTATTGCAAATACCTTTAC
GGTGAATGTTAATATACTAGGAGTGTTGGATATTGGGCATTCAACCACAACATTCTCTGTATTACAAAATGGTAAAGTGA
TTTATACACGTGAACAGTCATTTGGTGGTAAGGCATTAACTCAAGCAATTCAAAACCATTATGGTATTGATTTTAAAGAA
GCAAATGAAGCAAAAATAGAAGGTCGTTTGCCAGATGATTATGAAGCAGAAGTTTTGGAACCTTTCTTAGAACAGGTTGA
ACAACAAGCTTCTCGTGCTTTACAATTCTTCCAATCATCTTCAACAGTAGGTGAAATTGACCATTTATTATTAATTGGTG
GTAGTGCGAATTTACCAGGTTTAGCTCGAAAGTTACAAGGTAACTTAGGTTATCGTACAACAGTTGCAAATCCATTTGTT
CAAATGAGTTTCGCTAACCACATCGATACTAAGAAAATTGAAAATGATGCCGCAGGTCTACTTACAGTGTGTGGCTTGGC
TTTACGAGGGTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

62.216

100

0.622
  pilM Acinetobacter baumannii D1279779

61.932

100

0.619
  comM Acinetobacter baylyi ADP1

60.227

100

0.602
  pilM Legionella pneumophila strain ERS1305867

42.614

100

0.426