Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LU301_RS01040 Genome accession   NZ_CP089978
Coordinates   206031..206570 (+) Length   179 a.a.
NCBI ID   WP_305271710.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 201031..211570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS01025 (LU301_01020) comM 203385..204443 (+) 1059 WP_305271705.1 pilus assembly protein PilM Machinery gene
  LU301_RS01030 (LU301_01025) - 204443..205135 (+) 693 Protein_202 PilN domain-containing protein -
  LU301_RS01035 (LU301_01030) pilO 205333..206031 (+) 699 WP_305271707.1 type 4a pilus biogenesis protein PilO Machinery gene
  LU301_RS01040 (LU301_01035) pilP 206031..206570 (+) 540 WP_305271710.1 pilus assembly protein PilP Machinery gene
  LU301_RS01045 (LU301_01040) pilQ 206597..208723 (+) 2127 WP_305271712.1 type IV pilus secretin PilQ Machinery gene
  LU301_RS01050 (LU301_01045) aroK 208816..209379 (+) 564 WP_305271714.1 shikimate kinase AroK -
  LU301_RS01055 (LU301_01050) aroB 209463..210545 (+) 1083 WP_305271716.1 3-dehydroquinate synthase -
  LU301_RS01060 (LU301_01055) - 210550..211338 (+) 789 WP_305271718.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19848.19 Da        Isoelectric Point: 10.3122

>NTDB_id=639616 LU301_RS01040 WP_305271710.1 206031..206570(+) (pilP) [Moraxella sp. ZY210820]
MKLHHLILTATVATLMVGCDDRQQIAQDKMEEIRRNPPKQPEPIPVFTPVQTFLYAANSLRSPFIPASIAAEIKTMAGRK
VYPNEARPKQPLEKFALETLLLKGSMQNRAGHIEALIQTPEGKIISVSRGNYLGQNHGRIVRITPVQVDLIEIVPDGRGA
YIERPRTLILPQAASSAIK

Nucleotide


Download         Length: 540 bp        

>NTDB_id=639616 LU301_RS01040 WP_305271710.1 206031..206570(+) (pilP) [Moraxella sp. ZY210820]
ATGAAACTCCATCATCTGATTTTAACAGCAACTGTTGCAACATTGATGGTCGGTTGTGATGACCGCCAACAAATCGCACA
GGATAAAATGGAAGAAATTCGTCGTAATCCTCCAAAGCAACCTGAGCCGATTCCTGTATTTACACCTGTGCAAACATTCT
TGTATGCTGCAAACTCTCTTCGTTCGCCATTTATTCCAGCATCTATTGCTGCTGAGATTAAAACGATGGCAGGGCGTAAA
GTTTATCCAAATGAAGCTCGTCCTAAGCAGCCACTAGAGAAATTTGCTTTAGAGACATTATTGCTTAAAGGTAGTATGCA
AAATCGTGCAGGCCATATTGAAGCCTTAATTCAAACACCAGAAGGTAAAATCATTAGTGTAAGTCGTGGTAACTATCTGG
GGCAAAATCATGGTCGTATTGTACGTATTACACCTGTACAAGTCGATTTGATTGAAATTGTACCTGATGGTCGTGGTGCG
TATATTGAACGTCCACGTACATTAATATTGCCACAAGCAGCATCATCTGCGATTAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

54.706

94.972

0.52
  comL Acinetobacter baylyi ADP1

53.892

93.296

0.503