Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LU301_RS01035 Genome accession   NZ_CP089978
Coordinates   205333..206031 (+) Length   232 a.a.
NCBI ID   WP_305271707.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200333..211031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS01020 (LU301_01015) - 200493..203216 (-) 2724 WP_305271703.1 penicillin-binding protein 1A -
  LU301_RS01025 (LU301_01020) comM 203385..204443 (+) 1059 WP_305271705.1 pilus assembly protein PilM Machinery gene
  LU301_RS01030 (LU301_01025) - 204443..205135 (+) 693 Protein_202 PilN domain-containing protein -
  LU301_RS01035 (LU301_01030) pilO 205333..206031 (+) 699 WP_305271707.1 type 4a pilus biogenesis protein PilO Machinery gene
  LU301_RS01040 (LU301_01035) pilP 206031..206570 (+) 540 WP_305271710.1 pilus assembly protein PilP Machinery gene
  LU301_RS01045 (LU301_01040) pilQ 206597..208723 (+) 2127 WP_305271712.1 type IV pilus secretin PilQ Machinery gene
  LU301_RS01050 (LU301_01045) aroK 208816..209379 (+) 564 WP_305271714.1 shikimate kinase AroK -
  LU301_RS01055 (LU301_01050) aroB 209463..210545 (+) 1083 WP_305271716.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26276.90 Da        Isoelectric Point: 4.7788

>NTDB_id=639615 LU301_RS01035 WP_305271707.1 205333..206031(+) (pilO) [Moraxella sp. ZY210820]
MSREDLDGVNVTPKKKMTVDQFFKQFNNLDNSNVGGWPLPVKITVWIFIFAAVCAAGYFFVIKPKQEEISTAEAQQENLL
KEFQEKDSRVRNSKLLQEQLKQMEAQFQQQLTQLPKETEIPALVEDINITGVNAGLKFKNIKLEPEVTQEFFIEQPITIE
ATGDYHNFGNFVSNIALLPRIVTLHDFEIIGNVDSKSDIPVVTYKITAKTYRYKEQTAEVTTPEAGKEGGAN

Nucleotide


Download         Length: 699 bp        

>NTDB_id=639615 LU301_RS01035 WP_305271707.1 205333..206031(+) (pilO) [Moraxella sp. ZY210820]
ATGAGTCGTGAAGATTTAGATGGTGTAAATGTAACACCAAAGAAGAAAATGACAGTTGATCAGTTCTTTAAACAATTTAA
TAATCTAGATAATAGCAATGTAGGTGGTTGGCCACTACCTGTAAAAATTACAGTGTGGATTTTTATCTTTGCTGCAGTTT
GTGCTGCAGGTTATTTCTTTGTGATTAAGCCAAAACAAGAAGAGATTTCAACTGCAGAAGCACAACAGGAAAACTTATTG
AAAGAGTTTCAGGAAAAAGATTCTCGTGTGCGTAATTCAAAATTATTGCAAGAGCAACTGAAACAAATGGAAGCTCAATT
CCAACAGCAATTAACTCAATTACCTAAAGAAACTGAGATTCCTGCTTTGGTTGAAGATATTAACATTACAGGTGTAAATG
CAGGTTTGAAGTTTAAAAATATTAAACTGGAGCCAGAAGTTACACAAGAGTTCTTTATCGAACAGCCGATTACCATTGAA
GCAACGGGTGATTATCACAATTTTGGTAATTTTGTAAGTAATATTGCGTTATTACCACGTATTGTAACGTTGCATGATTT
TGAAATTATTGGTAATGTTGATTCAAAATCAGATATTCCAGTAGTAACTTATAAAATTACTGCAAAAACGTATCGCTATA
AAGAACAAACTGCTGAAGTAACTACACCAGAAGCAGGTAAAGAAGGGGGAGCTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(70-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

59.664

100

0.612
  comO Acinetobacter baylyi ADP1

64.815

93.103

0.603