Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LUY95_RS15140 Genome accession   NZ_CP089506
Coordinates   3004428..3004898 (+) Length   156 a.a.
NCBI ID   WP_000934764.1    Uniprot ID   A0A9P4DKA4
Organism   Staphylococcus aureus strain 0.0066_IIV_ST239     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2999428..3009898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY95_RS15100 - 2999443..2999763 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  LUY95_RS15105 - 2999760..2999921 (+) 162 WP_000066017.1 DUF1270 domain-containing protein -
  LUY95_RS15110 - 3000016..3000342 (+) 327 WP_000165375.1 DUF2482 family protein -
  LUY95_RS15115 - 3000323..3000583 (+) 261 WP_000291503.1 DUF1108 family protein -
  LUY95_RS15120 - 3000592..3000867 (+) 276 WP_407545716.1 hypothetical protein -
  LUY95_RS15125 - 3000864..3002807 (+) 1944 WP_000700577.1 AAA family ATPase -
  LUY95_RS15130 - 3002809..3003729 (+) 921 WP_407545717.1 recombinase RecT -
  LUY95_RS15135 - 3003810..3004427 (+) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  LUY95_RS15140 ssbA 3004428..3004898 (+) 471 WP_000934764.1 single-stranded DNA-binding protein Machinery gene
  LUY95_RS15145 - 3004928..3005812 (+) 885 WP_000148316.1 DnaD domain protein -
  LUY95_RS15150 - 3005819..3006037 (+) 219 WP_000338531.1 hypothetical protein -
  LUY95_RS15155 - 3006046..3006355 (+) 310 Protein_2951 RusA family crossover junction endodeoxyribonuclease -
  LUY95_RS15160 - 3006368..3006736 (+) 369 WP_000101274.1 SA1788 family PVL leukocidin-associated protein -
  LUY95_RS15165 - 3006740..3006982 (+) 243 WP_000131366.1 SAV1978 family virulence-associated passenger protein -
  LUY95_RS15170 - 3006994..3007161 (+) 168 WP_001624242.1 hypothetical protein -
  LUY95_RS15175 - 3007154..3007405 (+) 252 WP_001065092.1 DUF1024 family protein -
  LUY95_RS15180 - 3007395..3007577 (+) 183 WP_000028422.1 hypothetical protein -
  LUY95_RS15185 - 3007570..3008112 (+) 543 WP_000185659.1 dUTP diphosphatase -
  LUY95_RS15190 - 3008149..3008355 (+) 207 WP_000195803.1 DUF1381 domain-containing protein -
  LUY95_RS15195 - 3008352..3008738 (+) 387 WP_000592207.1 hypothetical protein -
  LUY95_RS15200 rinB 3008735..3008884 (+) 150 WP_000595265.1 transcriptional activator RinB -
  LUY95_RS15205 - 3008884..3009084 (+) 201 WP_000265043.1 DUF1514 family protein -
  LUY95_RS15210 - 3009112..3009528 (+) 417 WP_000590122.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17627.49 Da        Isoelectric Point: 5.2672

>NTDB_id=637800 LUY95_RS15140 WP_000934764.1 3004428..3004898(+) (ssbA) [Staphylococcus aureus strain 0.0066_IIV_ST239]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=637800 LUY95_RS15140 WP_000934764.1 3004428..3004898(+) (ssbA) [Staphylococcus aureus strain 0.0066_IIV_ST239]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Neisseria meningitidis MC58

33.526

100

0.372
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.372
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Vibrio cholerae strain A1552

31.492

100

0.365