Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   CSB63_RS10120 Genome accession   NZ_CP089060
Coordinates   1754631..1754723 (-) Length   30 a.a.
NCBI ID   WP_418346448.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1754868..1756043 1754631..1754723 flank 145


Gene organization within MGE regions


Location: 1754631..1756043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS10120 prx 1754631..1754723 (-) 93 WP_418346448.1 hypothetical protein Regulator
  CSB63_RS09270 (CSB63_1960) - 1754868..1756043 (+) 1176 WP_099421264.1 IS256-like element IS1191 family transposase -

Sequence

Protein


Download         Length: 30 a.a.        Molecular weight: 3454.91 Da        Isoelectric Point: 8.9001

>NTDB_id=634900 CSB63_RS10120 WP_418346448.1 1754631..1754723(-) (prx) [Streptococcus thermophilus strain CH8]
MKGDTVQIVRKNGKIHDNVLDGERVEHTKH

Nucleotide


Download         Length: 93 bp        

>NTDB_id=634900 CSB63_RS10120 WP_418346448.1 1754631..1754723(-) (prx) [Streptococcus thermophilus strain CH8]
ATTAAAGGTGATACTGTCCAGATTGTCCGAAAGAATGGTAAGATCCATGACAACGTTTTAGACGGTGAACGAGTTGAGCA
CACGAAACATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

65.385

86.667

0.567
  prx Streptococcus pyogenes MGAS315

73.913

76.667

0.567
  prx Streptococcus pyogenes MGAS8232

55.556

90

0.5
  prx Streptococcus pyogenes MGAS315

60

83.333

0.5
  prx Streptococcus pyogenes MGAS315

60

83.333

0.5
  prx Streptococcus pyogenes MGAS315

77.778

60

0.467
  prx Streptococcus pyogenes MGAS315

51.852

90

0.467