Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LSO58_RS15250 Genome accession   NZ_CP089044
Coordinates   3225378..3227507 (-) Length   709 a.a.
NCBI ID   WP_171327140.1    Uniprot ID   A0AA46PA83
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3220378..3232507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS15235 (LSO58_15210) - 3222811..3223671 (-) 861 WP_004991747.1 hypothetical protein -
  LSO58_RS15240 (LSO58_15215) aroB 3223685..3224767 (-) 1083 WP_126624235.1 3-dehydroquinate synthase -
  LSO58_RS15245 (LSO58_15220) aroK 3224799..3225341 (-) 543 WP_104794740.1 shikimate kinase AroK -
  LSO58_RS15250 (LSO58_15225) pilQ 3225378..3227507 (-) 2130 WP_171327140.1 type IV pilus secretin PilQ family protein Machinery gene
  LSO58_RS15255 (LSO58_15230) pilP 3227570..3228094 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO58_RS15260 (LSO58_15235) pilO 3228094..3228807 (-) 714 WP_044434144.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO58_RS15265 (LSO58_15240) pilN 3228804..3229442 (-) 639 WP_104794744.1 PilN domain-containing protein Machinery gene
  LSO58_RS15270 (LSO58_15245) pilM 3229442..3230500 (-) 1059 WP_104794745.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 76694.13 Da        Isoelectric Point: 5.1495

>NTDB_id=634791 LSO58_RS15250 WP_171327140.1 3225378..3227507(-) (pilQ) [Acinetobacter ursingii strain RIVM_C010761]
MNHTVRQFSMGAVAFAIMQVASAQVSITNIVPMNIAGQGTEIRVMFNGLPPQPQAYQMEQPSRLILDFDKAQLGLKQNTI
AVATNEASSVDVVSDAKRSRLTVNLKDAGAFTTRVEGNTFILKINSAQQVMTPAAVAMPAATNIQQGVSNIGFQRGSQGE
GQVVIDLLGSNTPVDVQQQGSKIVVRMLGNKIPTNLARRLNVNDFATPVASVDAYNEGGNGVIVVQSAGSYEYMAYQAEN
KLTLSLKRPVERNQLGARSTPNYSGKKISLDFQDIEVRRVLQLLADFTDINMVTADSVQGNITLRLKDVPWDQALDIILK
TKNLDKRRNGNVIWIAPVTELTKAEEEEAKAIAQSVKLAPLQTEYIQLSYAKAADIEKLMTQGKNSSSSGSSSGGSEPLG
DSVGSLLSPRGTVSIDPRTNTLIINDTAQKIDQIRKMIDLLDVRVKQVMVEARIVRASTSFTKEMGVKWGVLSQGITKNN
DLLVGGSETTLWNLRDPDDDGKYTIERPDNLNVDLGVTSAGASKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVMT
ADKQTAKVATGQEVPYQSTTNSAAGSTATTSFKEALLSLEVTPSITPDGKIQMLLDISKDSIGGEAPNGELILNKNTINT
NVLVDNGETVILGGVFEQTTTNQQTKVPFLGDLPWVGRLFRKDSKKDDKQELLIFVTPRIVNDTQVRNQ

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=634791 LSO58_RS15250 WP_171327140.1 3225378..3227507(-) (pilQ) [Acinetobacter ursingii strain RIVM_C010761]
ATGAATCATACAGTTCGACAGTTTTCAATGGGTGCGGTTGCATTTGCAATCATGCAAGTGGCTAGTGCGCAGGTCAGTAT
TACCAATATTGTGCCCATGAATATCGCAGGACAGGGGACAGAAATCCGTGTGATGTTCAATGGTTTGCCACCGCAACCAC
AAGCATATCAAATGGAACAGCCATCCAGACTGATTTTGGATTTTGATAAGGCTCAGCTGGGTCTTAAACAAAATACTATT
GCTGTCGCGACCAATGAAGCCAGCAGTGTCGATGTAGTATCTGATGCGAAGCGTTCACGTTTAACCGTAAATTTAAAAGA
TGCTGGAGCATTTACTACACGTGTTGAAGGCAATACTTTTATTTTAAAGATTAATAGTGCCCAACAAGTAATGACTCCTG
CCGCTGTTGCTATGCCAGCGGCAACGAATATTCAGCAAGGGGTTTCTAATATTGGTTTTCAGCGCGGCTCGCAGGGCGAA
GGTCAAGTGGTTATCGATTTGCTTGGCAGTAATACGCCTGTCGATGTACAACAACAAGGCAGTAAAATTGTTGTACGCAT
GCTTGGCAATAAAATTCCGACCAATTTGGCACGACGTTTAAATGTCAATGATTTTGCTACGCCAGTTGCGAGTGTGGATG
CCTATAATGAAGGCGGCAATGGGGTAATCGTGGTGCAATCTGCTGGTAGCTATGAATATATGGCATATCAGGCAGAAAAT
AAACTGACTTTAAGCCTTAAACGTCCAGTGGAGCGTAATCAGTTAGGCGCACGTTCTACGCCAAATTATAGTGGTAAAAA
AATCTCTCTAGATTTCCAAGATATTGAAGTGCGTCGTGTACTTCAGTTATTGGCAGATTTTACTGATATCAACATGGTGA
CGGCAGATTCAGTACAGGGCAATATTACTCTACGCTTAAAGGATGTGCCGTGGGATCAGGCGTTAGATATTATTTTAAAA
ACTAAAAATCTGGATAAACGCCGTAATGGTAATGTGATCTGGATTGCGCCTGTTACTGAATTAACCAAAGCTGAAGAAGA
AGAAGCCAAAGCGATTGCGCAAAGTGTCAAGCTTGCACCATTACAAACTGAATATATTCAACTCAGTTATGCGAAAGCCG
CCGATATTGAAAAATTGATGACTCAAGGTAAAAACAGCTCAAGCTCAGGTTCATCATCAGGTGGTTCAGAGCCGCTAGGT
GATAGTGTTGGTAGTTTGCTGAGTCCAAGAGGTACTGTGTCGATTGATCCACGAACCAATACTTTAATCATTAATGATAC
TGCGCAAAAAATTGATCAGATTCGTAAAATGATTGATTTATTGGATGTACGTGTTAAGCAGGTGATGGTGGAAGCGCGGA
TTGTGCGAGCAAGCACCTCGTTTACCAAAGAAATGGGCGTAAAATGGGGTGTCCTTTCACAGGGCATTACTAAAAATAAT
GATTTATTGGTTGGTGGTAGTGAAACCACTTTATGGAACTTACGTGATCCAGATGACGATGGTAAGTACACCATTGAACG
TCCAGATAACCTGAATGTAGATTTAGGTGTCACCTCTGCGGGTGCGAGTAAAATTGCCTTTGGCTTAATTAGTTTGTCTG
ACTTTATGCTGGATTTGGAATTATCTGCATTACAAGCAGATGGTTATGGTGAAGTGATTTCAACGCCAAAAGTCATGACT
GCCGATAAACAAACTGCCAAAGTTGCAACGGGGCAGGAAGTACCTTATCAGTCCACCACAAACTCTGCGGCGGGTTCCAC
TGCAACCACTTCATTTAAAGAAGCTTTACTCAGCCTTGAAGTCACACCAAGTATTACACCTGATGGTAAAATCCAGATGC
TATTGGATATCTCCAAAGACTCTATTGGTGGAGAAGCACCGAATGGTGAATTGATCTTGAATAAAAACACCATTAATACC
AATGTGTTGGTTGATAATGGTGAAACGGTGATTCTGGGTGGGGTATTTGAACAGACTACAACCAATCAACAGACAAAAGT
GCCGTTCTTGGGAGACTTACCTTGGGTGGGACGTTTATTTAGAAAAGACTCTAAAAAGGACGATAAACAAGAGTTGTTGA
TCTTCGTTACCCCGAGAATTGTTAATGACACTCAGGTGAGAAATCAGTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-121)

Bacterial type II and III secretion system protein (Secretin)

(543-701)

Bacterial type II/III secretion system short domain (Secretin_N)

(364-447)

Secretin and TonB N terminus short domain (STN)

(294-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

80.992

100

0.829
  pilQ Acinetobacter baumannii strain A118

80.854

100

0.828
  comQ Acinetobacter baylyi ADP1

79.635

100

0.8
  pilQ Pseudomonas aeruginosa PAK

41.528

100

0.422