Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LSO58_RS15260 Genome accession   NZ_CP089044
Coordinates   3228094..3228807 (-) Length   237 a.a.
NCBI ID   WP_044434144.1    Uniprot ID   A0AA46NMD2
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3223094..3233807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS15240 (LSO58_15215) aroB 3223685..3224767 (-) 1083 WP_126624235.1 3-dehydroquinate synthase -
  LSO58_RS15245 (LSO58_15220) aroK 3224799..3225341 (-) 543 WP_104794740.1 shikimate kinase AroK -
  LSO58_RS15250 (LSO58_15225) pilQ 3225378..3227507 (-) 2130 WP_171327140.1 type IV pilus secretin PilQ family protein Machinery gene
  LSO58_RS15255 (LSO58_15230) pilP 3227570..3228094 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO58_RS15260 (LSO58_15235) pilO 3228094..3228807 (-) 714 WP_044434144.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO58_RS15265 (LSO58_15240) pilN 3228804..3229442 (-) 639 WP_104794744.1 PilN domain-containing protein Machinery gene
  LSO58_RS15270 (LSO58_15245) pilM 3229442..3230500 (-) 1059 WP_104794745.1 pilus assembly protein PilM Machinery gene
  LSO58_RS15275 (LSO58_15250) ponA 3230664..3233228 (+) 2565 WP_104794746.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26663.43 Da        Isoelectric Point: 4.9910

>NTDB_id=634793 LSO58_RS15260 WP_044434144.1 3228094..3228807(-) (pilO) [Acinetobacter ursingii strain RIVM_C010761]
MSRDEFNELDPEVAAPKKKKLTLDKFLQQFNTLDMNNYGGWPLSVKITCWIFIFFAVCALGYFLAIKPKLDAISTAQAQE
QNLLNEFREKDSKLRNLQQYQVQLQEMESNFNQQLAQLPKETEIPSLVEDINMTGVNSGLKFKNIRLENEVKQEFFIEQP
ISIDATGDYHAFGAFVSAIAALPRIVTLHDFVIEGKQVKEKADIPEISYSVKAKTYRYIGADDQASGASAPVAAGAK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=634793 LSO58_RS15260 WP_044434144.1 3228094..3228807(-) (pilO) [Acinetobacter ursingii strain RIVM_C010761]
ATGAGTCGTGATGAATTCAATGAACTAGATCCTGAAGTTGCTGCACCAAAGAAAAAGAAATTGACCTTAGATAAATTTCT
TCAGCAGTTTAATACGCTGGATATGAATAACTACGGGGGATGGCCACTCTCAGTTAAGATTACTTGCTGGATTTTTATTT
TCTTCGCCGTCTGTGCTTTGGGCTATTTTTTAGCCATTAAGCCTAAACTGGATGCGATCTCAACAGCTCAGGCACAAGAG
CAGAATTTGCTCAACGAGTTTCGTGAAAAGGATTCAAAATTACGTAACTTGCAGCAATATCAGGTTCAATTGCAGGAAAT
GGAATCGAATTTTAACCAGCAACTGGCGCAACTTCCAAAAGAAACAGAAATTCCAAGTCTGGTTGAAGATATCAATATGA
CAGGGGTAAATTCTGGACTTAAATTTAAAAATATTCGTCTGGAAAATGAAGTTAAACAAGAATTCTTTATTGAGCAGCCG
ATCTCGATTGACGCGACTGGGGATTATCATGCCTTTGGTGCATTTGTGAGTGCTATTGCAGCACTACCACGTATTGTGAC
TTTGCATGATTTTGTCATTGAAGGAAAGCAGGTTAAAGAAAAAGCAGATATTCCTGAAATTAGTTATTCCGTGAAAGCAA
AAACCTATCGATATATAGGTGCGGATGATCAGGCGAGTGGTGCTTCTGCTCCAGTTGCAGCGGGGGCAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

75.949

100

0.759
  comO Acinetobacter baylyi ADP1

76.522

97.046

0.743