Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LSO58_RS15255 Genome accession   NZ_CP089044
Coordinates   3227570..3228094 (-) Length   174 a.a.
NCBI ID   WP_004991753.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3222570..3233094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS15235 (LSO58_15210) - 3222811..3223671 (-) 861 WP_004991747.1 hypothetical protein -
  LSO58_RS15240 (LSO58_15215) aroB 3223685..3224767 (-) 1083 WP_126624235.1 3-dehydroquinate synthase -
  LSO58_RS15245 (LSO58_15220) aroK 3224799..3225341 (-) 543 WP_104794740.1 shikimate kinase AroK -
  LSO58_RS15250 (LSO58_15225) pilQ 3225378..3227507 (-) 2130 WP_171327140.1 type IV pilus secretin PilQ family protein Machinery gene
  LSO58_RS15255 (LSO58_15230) pilP 3227570..3228094 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO58_RS15260 (LSO58_15235) pilO 3228094..3228807 (-) 714 WP_044434144.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO58_RS15265 (LSO58_15240) pilN 3228804..3229442 (-) 639 WP_104794744.1 PilN domain-containing protein Machinery gene
  LSO58_RS15270 (LSO58_15245) pilM 3229442..3230500 (-) 1059 WP_104794745.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19069.24 Da        Isoelectric Point: 8.2498

>NTDB_id=634792 LSO58_RS15255 WP_004991753.1 3227570..3228094(-) (pilP) [Acinetobacter ursingii strain RIVM_C010761]
MKKHSIFMAIVCCGLVGCDSRIDAVNEQMAAIRNQPPLPIEPAPVFTPVPSFTYSAMQLKSPFLPSSLAAELKIMAGKRV
YPNFNRQPQPLESYALESLNMKGSMRSQNGKILALIQTPDGQVERVQVGSYMGMNQGRIVGISPTQIDLVEIVPDGRDGY
VERPRTLVLIGPEP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=634792 LSO58_RS15255 WP_004991753.1 3227570..3228094(-) (pilP) [Acinetobacter ursingii strain RIVM_C010761]
ATGAAAAAACATAGTATTTTCATGGCAATCGTATGTTGTGGTTTGGTTGGTTGTGATTCACGTATTGACGCTGTAAATGA
ACAAATGGCAGCCATTCGTAATCAGCCACCTTTGCCGATTGAACCTGCACCTGTTTTTACGCCTGTGCCGAGTTTTACCT
ATTCAGCCATGCAGTTGAAAAGCCCATTTTTACCTAGCTCTTTGGCAGCTGAACTCAAAATTATGGCAGGTAAACGGGTT
TATCCGAACTTTAATCGTCAGCCGCAACCACTTGAAAGCTACGCACTCGAATCTTTAAATATGAAAGGCAGTATGCGTAG
CCAAAATGGAAAGATTCTTGCATTAATTCAGACGCCTGATGGACAAGTTGAGCGGGTTCAGGTTGGAAGCTATATGGGAA
TGAATCAAGGGCGAATTGTCGGAATCAGTCCGACACAAATTGATTTGGTTGAAATTGTACCAGATGGTCGAGATGGTTAT
GTTGAGCGTCCGCGTACCTTGGTTCTGATTGGGCCTGAGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

80.571

100

0.81
  comL Acinetobacter baylyi ADP1

72.414

100

0.724