Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LSO58_RS15265 Genome accession   NZ_CP089044
Coordinates   3228804..3229442 (-) Length   212 a.a.
NCBI ID   WP_104794744.1    Uniprot ID   A0AA46NPU0
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3223804..3234442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS15245 (LSO58_15220) aroK 3224799..3225341 (-) 543 WP_104794740.1 shikimate kinase AroK -
  LSO58_RS15250 (LSO58_15225) pilQ 3225378..3227507 (-) 2130 WP_171327140.1 type IV pilus secretin PilQ family protein Machinery gene
  LSO58_RS15255 (LSO58_15230) pilP 3227570..3228094 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO58_RS15260 (LSO58_15235) pilO 3228094..3228807 (-) 714 WP_044434144.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO58_RS15265 (LSO58_15240) pilN 3228804..3229442 (-) 639 WP_104794744.1 PilN domain-containing protein Machinery gene
  LSO58_RS15270 (LSO58_15245) pilM 3229442..3230500 (-) 1059 WP_104794745.1 pilus assembly protein PilM Machinery gene
  LSO58_RS15275 (LSO58_15250) ponA 3230664..3233228 (+) 2565 WP_104794746.1 penicillin-binding protein PBP1a -
  LSO58_RS15280 (LSO58_15255) - 3233277..3234080 (-) 804 WP_004991763.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23748.76 Da        Isoelectric Point: 4.9391

>NTDB_id=634794 LSO58_RS15265 WP_104794744.1 3228804..3229442(-) (pilN) [Acinetobacter ursingii strain RIVM_C010761]
MAKINLLPWRDELREQRKKQFIAFSAAVAVLGVVAVVLAWLFYDHKLNDQEQANQLIVSTNQNLDTQLKSLDGLQERRNA
IVERMKLIQGLEGQRPVTVRLIDELVRVTPSNMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
ADDKKDQNQSSVVPRVEESYGTFVVTTDLGEIGASVTEDNNDQSGSNTGAAQ

Nucleotide


Download         Length: 639 bp        

>NTDB_id=634794 LSO58_RS15265 WP_104794744.1 3228804..3229442(-) (pilN) [Acinetobacter ursingii strain RIVM_C010761]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAGCAGCGCAAGAAACAATTTATTGCATTTAGTGCTGC
GGTTGCAGTACTTGGGGTAGTAGCTGTGGTCTTGGCTTGGTTGTTTTATGATCATAAGCTTAACGATCAGGAACAAGCCA
ATCAATTGATTGTCAGTACCAACCAGAATCTGGATACGCAGTTGAAATCACTTGATGGTCTGCAAGAGCGCCGCAATGCG
ATCGTAGAGCGTATGAAGCTGATTCAAGGTTTGGAAGGTCAACGTCCAGTAACCGTTCGCTTGATTGATGAATTGGTGCG
GGTGACACCAAGTAATATGTATCTGACCAAATTCAGTCGTACAGGCGATAAATTTACCATTGAAGGCAAAGCGGAAAGTC
CAAATACTGTTGCAGAGTTGTTGCGTAACTTAGAAGCGTCACCGTGGTATCGCAATGCCTTTATGAACTCCTTCTTGGCG
GCAGATGATAAAAAAGATCAGAATCAAAGCTCTGTGGTGCCGCGTGTCGAAGAAAGCTATGGCACTTTCGTTGTGACCAC
AGATTTGGGTGAAATAGGGGCATCAGTTACAGAAGATAATAACGATCAATCAGGTTCAAATACGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

73.709

100

0.741
  comN Acinetobacter baylyi ADP1

74.163

98.585

0.731