Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LSO59_RS15760 Genome accession   NZ_CP089038
Coordinates   3372195..3374324 (-) Length   709 a.a.
NCBI ID   WP_263505756.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3367195..3379324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS15745 (LSO59_15725) - 3369627..3370487 (-) 861 WP_119686169.1 hypothetical protein -
  LSO59_RS15750 (LSO59_15730) aroB 3370501..3371583 (-) 1083 WP_119686170.1 3-dehydroquinate synthase -
  LSO59_RS15755 (LSO59_15735) aroK 3371616..3372158 (-) 543 WP_004991750.1 shikimate kinase AroK -
  LSO59_RS15760 (LSO59_15740) pilQ 3372195..3374324 (-) 2130 WP_263505756.1 type IV pilus secretin PilQ family protein Machinery gene
  LSO59_RS15765 (LSO59_15745) pilP 3374387..3374911 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO59_RS15770 (LSO59_15750) pilO 3374911..3375624 (-) 714 WP_004991755.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO59_RS15775 (LSO59_15755) pilN 3375621..3376259 (-) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  LSO59_RS15780 (LSO59_15760) pilM 3376259..3377317 (-) 1059 WP_004991759.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 76710.13 Da        Isoelectric Point: 5.1468

>NTDB_id=634751 LSO59_RS15760 WP_263505756.1 3372195..3374324(-) (pilQ) [Acinetobacter ursingii strain RIVM_C011601]
MNHTVRQFSMGAVAFAIMQVASAQVSITNIVPMNIAGQGTEIRVMFNGLPPQPQAYQMEQPSRLILDFDKAQLGLKQNTI
AVATNEASSVDVVSDAKRSRLTVNLKDAGAFTTRVEGNTFILKINSAQQVMTPAAVAMPAATNIQQGVSNIGFQRGSQGE
GQVVIDLLGSNTPVDVQQQGSKIVVRMLGNKIPTNLARRLNVNDFATPVASVDAYNEGGNGVIVVQSAGSYEYMAYQAEN
KLTLSLKRPVDRNQLGARSTPNYSGKKISLDFQDIEVRRVLQLLADFTDINMVTADSVQGNITLRLKDVPWDQALDIILK
TKNLDKRRNGNVIWIAPVTELTKAEEEEAKAIAQSVKLAPLQTEYIQLSYAKAADIEKLMTQGKNSSSSGSSSGGSEPLG
DSVGSLLSPRGTVSIDPRTNTLIINDTAQKIDQIRKMIDLLDVRVKQVMVEARIVRASTSFTKEMGVKWGVLSQGITKNN
DLLVGGSETTLWNLRDPDDDGKYTIERPDNLNVDLGVTSAGASKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVMT
ADKQTAKVATGQEVPYQSTTNSASGSTATTSFKEALLSLEVTPSITPDGKIQMLLDISKDSIAGEAPNGELILNKNTINT
NVLVDNGETVILGGVFEQTTTNQQTKVPFLGDLPWVGRLFRKDSKKDDKQELLIFVTPRIVNDTQVRNQ

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=634751 LSO59_RS15760 WP_263505756.1 3372195..3374324(-) (pilQ) [Acinetobacter ursingii strain RIVM_C011601]
ATGAATCATACAGTTCGACAGTTTTCAATGGGTGCGGTTGCATTTGCAATCATGCAAGTGGCTAGTGCGCAGGTCAGTAT
TACCAATATTGTGCCCATGAATATCGCAGGACAGGGGACAGAAATCCGTGTGATGTTCAATGGTTTGCCACCGCAACCAC
AAGCATATCAAATGGAACAGCCATCCAGACTGATTTTGGATTTTGATAAGGCTCAGCTGGGTCTTAAACAAAATACTATT
GCTGTCGCGACCAATGAAGCCAGCAGTGTCGATGTAGTATCTGATGCGAAGCGTTCACGTTTAACCGTAAATTTAAAAGA
TGCTGGAGCATTTACTACACGTGTTGAAGGCAATACTTTTATTTTAAAGATTAATAGTGCTCAACAAGTAATGACTCCTG
CCGCTGTTGCTATGCCAGCGGCAACGAATATTCAGCAAGGGGTTTCTAATATTGGTTTTCAGCGCGGCTCGCAGGGCGAA
GGTCAAGTGGTTATCGATTTGCTTGGCAGTAATACGCCTGTCGATGTACAACAACAAGGCAGTAAAATTGTTGTGCGTAT
GCTTGGCAATAAAATTCCAACCAATTTAGCACGACGTTTAAATGTCAATGATTTTGCCACGCCAGTTGCGAGTGTGGATG
CCTATAATGAAGGCGGCAATGGGGTAATCGTGGTGCAATCTGCTGGTAGCTATGAATATATGGCATATCAGGCAGAAAAT
AAACTGACTTTAAGCCTTAAACGTCCAGTGGATCGTAATCAGTTAGGCGCACGTTCTACGCCAAATTATAGTGGTAAAAA
AATCTCTCTAGATTTCCAGGATATTGAAGTGCGTCGTGTACTTCAGTTATTGGCAGATTTTACTGATATCAATATGGTGA
CGGCAGATTCAGTACAGGGCAATATTACTCTACGCTTAAAGGATGTACCGTGGGATCAGGCGTTAGATATTATTTTAAAA
ACTAAAAATCTGGATAAACGCCGTAATGGTAATGTGATCTGGATTGCGCCTGTTACTGAATTAACCAAAGCTGAAGAAGA
AGAAGCCAAAGCGATTGCGCAAAGTGTCAAGCTTGCACCATTACAAACTGAATATATTCAACTCAGTTATGCGAAAGCCG
CCGATATTGAAAAATTGATGACTCAAGGTAAAAACAGCTCAAGCTCAGGATCATCATCAGGTGGTTCAGAGCCGCTAGGT
GATAGTGTTGGTAGTTTGCTGAGTCCAAGAGGTACTGTGTCGATTGATCCGCGGACCAATACTTTAATCATTAATGATAC
TGCACAGAAAATTGATCAGATTCGTAAAATGATTGATTTATTGGATGTGCGTGTTAAGCAGGTGATGGTGGAGGCGCGGA
TTGTGAGAGCAAGCACTTCATTTACCAAAGAAATGGGGGTGAAGTGGGGGGTGCTTTCACAGGGCATTACTAAAAATAAT
GATTTATTGGTCGGTGGTAGTGAAACCACTTTATGGAATCTGCGTGATCCTGATGACGATGGTAAATACACCATCGAACG
CCCAGATAACCTGAATGTAGATTTAGGTGTCACTTCAGCGGGTGCGAGTAAAATTGCCTTTGGCTTAATTAGTTTGTCTG
ACTTTATGCTGGATTTGGAATTATCTGCATTACAAGCAGATGGTTATGGTGAAGTGATTTCAACGCCAAAAGTCATGACT
GCTGATAAACAAACCGCCAAAGTTGCAACGGGTCAGGAAGTGCCTTATCAGTCCACCACAAACTCTGCTTCGGGTTCAAC
GGCAACCACTTCATTTAAAGAAGCTTTACTCAGCCTTGAAGTCACACCAAGTATTACACCTGATGGTAAAATCCAGATGC
TGTTGGATATTTCCAAAGATTCGATTGCTGGAGAAGCGCCGAATGGTGAGTTGATCCTAAATAAAAACACGATTAATACC
AATGTATTGGTCGATAATGGTGAAACGGTGATTCTGGGTGGGGTATTTGAACAGACTACAACCAATCAACAGACGAAAGT
GCCGTTCTTGGGAGACTTACCTTGGGTGGGACGTTTATTTAGAAAAGACTCTAAAAAGGATGATAAACAAGAGTTATTGA
TCTTCGTGACACCGAGAATTGTTAATGACACTCAGGTGAGAAATCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(364-447)

Bacterial type II and III secretion system protein (Secretin)

(543-701)

AMIN domain (AMIN)

(38-121)

Secretin and TonB N terminus short domain (STN)

(294-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

81.129

100

0.831
  pilQ Acinetobacter baumannii strain A118

80.992

100

0.829
  comQ Acinetobacter baylyi ADP1

79.635

100

0.8
  pilQ Pseudomonas aeruginosa PAK

41.528

100

0.422