Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LSO59_RS15765 Genome accession   NZ_CP089038
Coordinates   3374387..3374911 (-) Length   174 a.a.
NCBI ID   WP_004991753.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3369387..3379911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS15745 (LSO59_15725) - 3369627..3370487 (-) 861 WP_119686169.1 hypothetical protein -
  LSO59_RS15750 (LSO59_15730) aroB 3370501..3371583 (-) 1083 WP_119686170.1 3-dehydroquinate synthase -
  LSO59_RS15755 (LSO59_15735) aroK 3371616..3372158 (-) 543 WP_004991750.1 shikimate kinase AroK -
  LSO59_RS15760 (LSO59_15740) pilQ 3372195..3374324 (-) 2130 WP_263505756.1 type IV pilus secretin PilQ family protein Machinery gene
  LSO59_RS15765 (LSO59_15745) pilP 3374387..3374911 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO59_RS15770 (LSO59_15750) pilO 3374911..3375624 (-) 714 WP_004991755.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO59_RS15775 (LSO59_15755) pilN 3375621..3376259 (-) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  LSO59_RS15780 (LSO59_15760) pilM 3376259..3377317 (-) 1059 WP_004991759.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19069.24 Da        Isoelectric Point: 8.2498

>NTDB_id=634752 LSO59_RS15765 WP_004991753.1 3374387..3374911(-) (pilP) [Acinetobacter ursingii strain RIVM_C011601]
MKKHSIFMAIVCCGLVGCDSRIDAVNEQMAAIRNQPPLPIEPAPVFTPVPSFTYSAMQLKSPFLPSSLAAELKIMAGKRV
YPNFNRQPQPLESYALESLNMKGSMRSQNGKILALIQTPDGQVERVQVGSYMGMNQGRIVGISPTQIDLVEIVPDGRDGY
VERPRTLVLIGPEP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=634752 LSO59_RS15765 WP_004991753.1 3374387..3374911(-) (pilP) [Acinetobacter ursingii strain RIVM_C011601]
ATGAAAAAACATAGTATTTTCATGGCAATCGTATGTTGTGGTTTGGTTGGTTGTGATTCACGTATTGACGCTGTAAATGA
ACAAATGGCAGCCATTCGTAATCAGCCACCTTTGCCGATTGAGCCAGCACCTGTTTTCACGCCTGTGCCGAGTTTTACCT
ATTCAGCCATGCAGTTGAAAAGCCCATTTTTACCTAGCTCTTTGGCAGCTGAACTCAAAATTATGGCAGGTAAACGGGTT
TATCCGAACTTTAATCGTCAGCCGCAACCACTTGAAAGCTACGCACTCGAATCTTTAAATATGAAAGGCAGTATGCGTAG
CCAAAATGGAAAGATTCTTGCATTAATTCAGACGCCTGATGGGCAAGTTGAGCGGGTTCAGGTTGGAAGCTATATGGGAA
TGAATCAAGGGCGAATTGTCGGAATCAGTCCGACACAAATTGATTTGGTTGAAATTGTACCAGATGGTCGAGATGGTTAT
GTTGAGCGTCCGCGTACCTTGGTTCTGATTGGGCCTGAGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

80.571

100

0.81
  comL Acinetobacter baylyi ADP1

72.414

100

0.724