Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LSO59_RS15775 Genome accession   NZ_CP089038
Coordinates   3375621..3376259 (-) Length   212 a.a.
NCBI ID   WP_004991757.1    Uniprot ID   A0A7T9UJB6
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3370621..3381259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS15755 (LSO59_15735) aroK 3371616..3372158 (-) 543 WP_004991750.1 shikimate kinase AroK -
  LSO59_RS15760 (LSO59_15740) pilQ 3372195..3374324 (-) 2130 WP_263505756.1 type IV pilus secretin PilQ family protein Machinery gene
  LSO59_RS15765 (LSO59_15745) pilP 3374387..3374911 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO59_RS15770 (LSO59_15750) pilO 3374911..3375624 (-) 714 WP_004991755.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO59_RS15775 (LSO59_15755) pilN 3375621..3376259 (-) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  LSO59_RS15780 (LSO59_15760) pilM 3376259..3377317 (-) 1059 WP_004991759.1 pilus assembly protein PilM Machinery gene
  LSO59_RS15785 (LSO59_15765) ponA 3377481..3380045 (+) 2565 WP_004991760.1 penicillin-binding protein PBP1a -
  LSO59_RS15790 (LSO59_15770) - 3380094..3380897 (-) 804 WP_201686681.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23734.73 Da        Isoelectric Point: 4.9391

>NTDB_id=634754 LSO59_RS15775 WP_004991757.1 3375621..3376259(-) (pilN) [Acinetobacter ursingii strain RIVM_C011601]
MAKINLLPWRDELREQRKKQFIAFSAAVAVLGVVAVVLAWLFYDHKLNDQEQANQLVVSTNQNLDTQLKSLDGLQERRNA
IVERMKLIQGLEGQRPVTVRLIDELVRVTPSNMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
ADDKKDQNQSSVVPRVEESYGTFVVTTDLGEIGASVTEDNNDQSGSNTGAAQ

Nucleotide


Download         Length: 639 bp        

>NTDB_id=634754 LSO59_RS15775 WP_004991757.1 3375621..3376259(-) (pilN) [Acinetobacter ursingii strain RIVM_C011601]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAGCAGCGCAAGAAACAATTTATTGCATTTAGTGCTGC
CGTTGCAGTACTTGGGGTAGTTGCTGTGGTCTTAGCTTGGTTGTTTTATGATCATAAGCTTAATGATCAAGAACAAGCCA
ATCAATTGGTTGTCAGTACTAACCAGAATCTGGATACGCAGTTGAAATCACTGGATGGCTTACAAGAGCGCCGAAATGCG
ATTGTAGAGCGTATGAAGCTGATTCAAGGTTTGGAAGGTCAACGTCCAGTAACCGTTCGCTTGATTGATGAATTGGTGCG
GGTGACACCCAGTAATATGTATCTGACCAAATTCAGTCGTACAGGCGATAAATTTACCATTGAAGGCAAAGCGGAAAGTC
CAAATACTGTTGCAGAGTTATTGCGTAACTTAGAGGCTTCACCGTGGTATCGTAATGCCTTTATGAACTCCTTCTTGGCA
GCAGATGATAAAAAAGATCAGAATCAAAGCTCTGTGGTGCCGCGTGTCGAAGAAAGCTATGGCACTTTCGTTGTGACCAC
AGATTTGGGTGAAATTGGGGCATCAGTTACAGAAGATAATAACGATCAATCAGGTTCAAATACGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T9UJB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

73.239

100

0.736
  comN Acinetobacter baylyi ADP1

73.684

98.585

0.726