Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LSO59_RS15770 Genome accession   NZ_CP089038
Coordinates   3374911..3375624 (-) Length   237 a.a.
NCBI ID   WP_004991755.1    Uniprot ID   N9DJW9
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3369911..3380624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS15750 (LSO59_15730) aroB 3370501..3371583 (-) 1083 WP_119686170.1 3-dehydroquinate synthase -
  LSO59_RS15755 (LSO59_15735) aroK 3371616..3372158 (-) 543 WP_004991750.1 shikimate kinase AroK -
  LSO59_RS15760 (LSO59_15740) pilQ 3372195..3374324 (-) 2130 WP_263505756.1 type IV pilus secretin PilQ family protein Machinery gene
  LSO59_RS15765 (LSO59_15745) pilP 3374387..3374911 (-) 525 WP_004991753.1 pilus assembly protein PilP Machinery gene
  LSO59_RS15770 (LSO59_15750) pilO 3374911..3375624 (-) 714 WP_004991755.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSO59_RS15775 (LSO59_15755) pilN 3375621..3376259 (-) 639 WP_004991757.1 PilN domain-containing protein Machinery gene
  LSO59_RS15780 (LSO59_15760) pilM 3376259..3377317 (-) 1059 WP_004991759.1 pilus assembly protein PilM Machinery gene
  LSO59_RS15785 (LSO59_15765) ponA 3377481..3380045 (+) 2565 WP_004991760.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26691.45 Da        Isoelectric Point: 4.9910

>NTDB_id=634753 LSO59_RS15770 WP_004991755.1 3374911..3375624(-) (pilO) [Acinetobacter ursingii strain RIVM_C011601]
MSRDEFNELDPEVAAPKKKKLTLDKFLQQFNTLDMNNYGGWPLSVKITCWIFIFFAVCALGYFLAIKPKLDAISTAQAQE
QNLLNEFREKDSKLRNLQQYQVQLQEMESNFNQQLAQLPKETEIPSLVEDINMTGVNSGLKFKNIRLENEVRQEFFIEQP
ISIDATGDYHAFGAFVSAIAALPRIVTLHDFVIEGKQVKEKADIPEISYSVKAKTYRYIGADDQASGASAPVAAGAK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=634753 LSO59_RS15770 WP_004991755.1 3374911..3375624(-) (pilO) [Acinetobacter ursingii strain RIVM_C011601]
ATGAGTCGTGATGAATTCAATGAACTAGATCCTGAAGTTGCTGCACCAAAGAAAAAGAAATTGACCTTAGATAAATTTCT
TCAGCAGTTTAATACGCTGGATATGAATAACTACGGGGGATGGCCACTCTCAGTTAAGATTACCTGCTGGATTTTTATTT
TCTTCGCCGTCTGTGCTTTGGGCTATTTTTTAGCCATTAAGCCTAAACTGGATGCGATCTCAACAGCTCAGGCACAAGAG
CAGAATTTGCTCAACGAGTTTCGTGAAAAGGATTCAAAATTACGTAACTTGCAGCAATATCAGGTTCAGTTGCAGGAAAT
GGAATCGAATTTTAACCAGCAATTGGCGCAACTTCCAAAAGAAACAGAAATTCCAAGTCTGGTTGAAGATATCAATATGA
CAGGGGTAAATTCTGGACTTAAATTTAAAAATATCCGTCTTGAAAATGAAGTTAGACAAGAGTTCTTTATTGAACAGCCG
ATCTCGATTGATGCGACTGGGGATTATCATGCCTTTGGTGCATTTGTAAGCGCAATTGCGGCATTGCCTCGTATTGTAAC
TTTGCATGATTTTGTGATTGAAGGTAAACAGGTTAAAGAAAAAGCAGATATTCCTGAAATTAGTTATTCCGTGAAAGCAA
AAACCTATCGATATATAGGTGCGGATGATCAGGCGAGTGGTGCTTCTGCTCCAGTTGCAGCGGGGGCAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9DJW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

75.527

100

0.755
  comO Acinetobacter baylyi ADP1

76.087

97.046

0.738