Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LRO84_RS01595 Genome accession   NZ_CP088955
Coordinates   338507..340660 (+) Length   717 a.a.
NCBI ID   WP_209831804.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333507..345660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS01575 (LRO84_01575) pilM 335461..336519 (+) 1059 WP_198496579.1 pilus assembly protein PilM Machinery gene
  LRO84_RS01580 (LRO84_01580) pilN 336519..337160 (+) 642 WP_231762420.1 PilN domain-containing protein Machinery gene
  LRO84_RS01585 (LRO84_01585) pilO 337157..337906 (+) 750 WP_231762421.1 type 4a pilus biogenesis protein PilO Machinery gene
  LRO84_RS01590 (LRO84_01590) pilP 337917..338444 (+) 528 WP_045433419.1 pilus assembly protein PilP Machinery gene
  LRO84_RS01595 (LRO84_01595) pilQ 338507..340660 (+) 2154 WP_209831804.1 type IV pilus secretin PilQ family protein Machinery gene
  LRO84_RS01600 (LRO84_01600) aroK 340672..341241 (+) 570 WP_003653807.1 shikimate kinase AroK -
  LRO84_RS01605 (LRO84_01605) aroB 341270..342352 (+) 1083 WP_231762422.1 3-dehydroquinate synthase -
  LRO84_RS01610 (LRO84_01610) - 342369..343250 (+) 882 WP_231762423.1 hypothetical protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 77621.83 Da        Isoelectric Point: 5.4782

>NTDB_id=634190 LRO84_RS01595 WP_209831804.1 338507..340660(+) (pilQ) [Acinetobacter calcoaceticus strain ARu19]
MNHVFRQFSMGAVAIAVMQVASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFNKAQQTLTQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAAIKPLPTSTMQPQGVSNIGFQRGGQGEGLIV
IDLLGSNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAQAQDIMGLITQGSNNSNGLQRTSAGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGVNSNNSLLVGGSDTTLWNLREPDDEGKYTIERPDNLNVDLGVTSTGASSIAFSLISMSDFMLDLELSALQADGYGEV
ISTPKVMTADKQRARVATGQQVPYQTTTNSASGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVADSAPNGELI
LNKNQINTNVLVNNGETVILGGVFEQATSNSQTKVPFLGDLPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=634190 LRO84_RS01595 WP_209831804.1 338507..340660(+) (pilQ) [Acinetobacter calcoaceticus strain ARu19]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCCATTGCAGTTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCGACACAAATTGCAGGTCAGGGTACAGAAATTAGAGTTATGTTTAATGGTTTGCCGCCACAACCAC
AGGCATATCAACTTGAAAATCCTTCACGTTTGATTTTGGATTTTAATAAAGCTCAGCAGACTTTAACACAGTCAAAAGTG
GCAATTGGTACAAATGAAGCGAGTTCGGTCGATGTAAGTTCTGACGATCAGCGCTCACGTTTAACTGTAAATTTAAAAGA
GGCGGGTGCGTTTACAACACGCATAGAAGGCAATACTTTTATTTTAAAGATTAATTCAGCTCAAGCAGCTATTAAACCTT
TACCAACAAGTACGATGCAACCACAAGGTGTTTCAAATATTGGCTTTCAGCGTGGTGGTCAAGGTGAAGGGCTAATTGTT
ATTGATTTATTGGGAAGTAATACCCCTGTTGATGTTCAACAACAAGGCAGCAAAGTTGTAGTGAGAACACTAGGCTCTAA
AATTCCCACTCATTTAGCTAAACGCTTAAATGTGAACGATTTTGCGACCCCTGTTTCTACCATCGAATCTTATAATGAAA
AAGGCAATGGTGTGATTACAATTCAATCCACTGGTAGCTATGAATATATGGCCTATCAAGCGGAAAATAAACTCACCATT
AGCTTAAAGCGTCCACAAGACAAAAACGTAACTTCTTTATATAAGACGCCTAATTACTCTGGTAATAAGCTTTCTCTTGA
TTTTCAAGATATTGAAGTTCGTAGGGTTCTACAGTTACTTGCCGATTTTACGGGCATTAATATGGTGGCCGCCGATAGTG
TGCAGGGTAATATTACTTTGCGATTGAAAGATGTTCCGTGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATCTG
GATAAACGCAGAAATGGTAACGTTATTTGGATTGCGCCTGTTGCAGAGTTGATTAAGGCTGAAGAGGAAGAAGCCAAGGC
TGTTGCTCAAAGTGTCAAACTCGCACCCTTACAAACTGAGTATATTCAACTTAAATATGCGCAAGCTCAGGATATTATGG
GTTTAATTACTCAAGGCTCAAATAATAGTAATGGTTTACAACGGACTTCTGCTGGCGGAACATCAACTTCTACTAACTTA
AATACGGGTGTTGATAGTCTAGGTAATAACGTTGGGAGTTTGTTGAGTCCACGTGGAACAATTACTCAAGATGATCGAAC
CAACACCTTAATTATTAATGATACAGCACAGTCGATTGATCAAATTCGTAAAATGATTGATTTACTGGATGTGCAAGTCA
AACAGGTCATGGTTGAGGCGCGGATTGTAAGAGCATCTACTTCATTCACCAAAGAACTTGGCGTTAAGTGGGGAATATTA
TCGCAAGGGGTGAATAGTAATAACAGTTTGTTGGTGGGGGGGAGTGATACGACCCTTTGGAATTTAAGAGAACCAGATGA
TGAAGGTAAATACACGATTGAACGGCCAGATAATTTAAATGTTGATTTGGGTGTGACATCAACTGGAGCCAGTAGTATAG
CTTTTAGCTTAATCAGTATGTCTGACTTTATGTTGGATTTAGAGCTATCAGCATTGCAGGCAGATGGCTATGGTGAGGTT
ATTTCAACACCAAAAGTCATGACTGCAGATAAACAACGAGCTAGAGTGGCAACAGGTCAGCAAGTTCCATATCAAACCAC
AACGAATTCTGCTTCTGGTTCAACTGCCACAACTTCTTTTAAAGATGCACTGTTAAGTTTAGATGTTACGCCAAGTATTA
CACCTGACGGTAAAATTCAAATGAAATTGGATATTTCAAAAGATTCGGTTGCCGATAGTGCTCCTAATGGCGAGTTAATT
TTGAATAAAAATCAGATTAATACCAATGTATTGGTGAATAATGGGGAAACCGTTATTTTGGGTGGAGTATTTGAACAGGC
AACTTCTAATTCACAAACCAAAGTTCCTTTCTTGGGAGACCTCCCTGTAGTTGGCCGTTTATTTAGAAAAGATGTGAAAT
CTGATGATAAACAAGAGTTACTGATTTTCGTTACACCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

Bacterial type II and III secretion system protein (Secretin)

(551-709)

AMIN domain (AMIN)

(39-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

90.582

100

0.912
  pilQ Acinetobacter baumannii strain A118

90.443

100

0.911
  comQ Acinetobacter baylyi ADP1

75.627

100

0.757
  pilQ Pseudomonas aeruginosa PAK

40.196

99.582

0.4