Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LRO84_RS01590 Genome accession   NZ_CP088955
Coordinates   337917..338444 (+) Length   175 a.a.
NCBI ID   WP_045433419.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332917..343444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS01575 (LRO84_01575) pilM 335461..336519 (+) 1059 WP_198496579.1 pilus assembly protein PilM Machinery gene
  LRO84_RS01580 (LRO84_01580) pilN 336519..337160 (+) 642 WP_231762420.1 PilN domain-containing protein Machinery gene
  LRO84_RS01585 (LRO84_01585) pilO 337157..337906 (+) 750 WP_231762421.1 type 4a pilus biogenesis protein PilO Machinery gene
  LRO84_RS01590 (LRO84_01590) pilP 337917..338444 (+) 528 WP_045433419.1 pilus assembly protein PilP Machinery gene
  LRO84_RS01595 (LRO84_01595) pilQ 338507..340660 (+) 2154 WP_209831804.1 type IV pilus secretin PilQ family protein Machinery gene
  LRO84_RS01600 (LRO84_01600) aroK 340672..341241 (+) 570 WP_003653807.1 shikimate kinase AroK -
  LRO84_RS01605 (LRO84_01605) aroB 341270..342352 (+) 1083 WP_231762422.1 3-dehydroquinate synthase -
  LRO84_RS01610 (LRO84_01610) - 342369..343250 (+) 882 WP_231762423.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19341.39 Da        Isoelectric Point: 9.0270

>NTDB_id=634189 LRO84_RS01590 WP_045433419.1 337917..338444(+) (pilP) [Acinetobacter calcoaceticus strain ARu19]
MKLKQISFSILACLVLVGCDSRIDAVNQQMADIRNQPPQQIDPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSIRNNRGQVLALIQSPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=634189 LRO84_RS01590 WP_045433419.1 337917..338444(+) (pilP) [Acinetobacter calcoaceticus strain ARu19]
ATGAAACTTAAGCAAATTTCTTTTTCTATTTTGGCATGTTTAGTTTTAGTCGGATGTGACTCGAGAATTGACGCTGTAAA
TCAGCAAATGGCAGATATACGTAACCAGCCACCACAGCAGATAGATCCAGCACCGGTTTTCACACCTGTGCCACAGTTTA
ATTATGCGGCTCATCAGCTAAAGAGTCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCAGGAAAACGG
GTATATCCGAATTTCTCACGTGCACCTCAGCCTCTAGAAAGTTATGCATTAGAATCCTTAAACATGAAAGGAAGCATACG
TAATAACCGTGGGCAAGTACTGGCTCTTATTCAATCACCTGATCAGCAAATTGAGCGAGTGCAGGTGGGGAACTATATCG
GGATGAATCAAGGGCGTATTACCCATATTGGTCCAACCCAGATTGATCTGGTAGAAATTGTCCCCGATGGGCGCGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

89.143

100

0.891
  comL Acinetobacter baylyi ADP1

70.76

97.714

0.691