Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LRO84_RS01580 Genome accession   NZ_CP088955
Coordinates   336519..337160 (+) Length   213 a.a.
NCBI ID   WP_231762420.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331519..342160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS01560 (LRO84_01560) - 331524..331856 (+) 333 WP_231762417.1 hypothetical protein -
  LRO84_RS01565 (LRO84_01565) - 331859..332683 (+) 825 WP_231762418.1 putative RNA methyltransferase -
  LRO84_RS01570 (LRO84_01570) ponA 332738..335299 (-) 2562 WP_231762419.1 penicillin-binding protein PBP1a -
  LRO84_RS01575 (LRO84_01575) pilM 335461..336519 (+) 1059 WP_198496579.1 pilus assembly protein PilM Machinery gene
  LRO84_RS01580 (LRO84_01580) pilN 336519..337160 (+) 642 WP_231762420.1 PilN domain-containing protein Machinery gene
  LRO84_RS01585 (LRO84_01585) pilO 337157..337906 (+) 750 WP_231762421.1 type 4a pilus biogenesis protein PilO Machinery gene
  LRO84_RS01590 (LRO84_01590) pilP 337917..338444 (+) 528 WP_045433419.1 pilus assembly protein PilP Machinery gene
  LRO84_RS01595 (LRO84_01595) pilQ 338507..340660 (+) 2154 WP_209831804.1 type IV pilus secretin PilQ family protein Machinery gene
  LRO84_RS01600 (LRO84_01600) aroK 340672..341241 (+) 570 WP_003653807.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23906.17 Da        Isoelectric Point: 5.1026

>NTDB_id=634187 LRO84_RS01580 WP_231762420.1 336519..337160(+) (pilN) [Acinetobacter calcoaceticus strain ARu19]
MATINLLPWRDGLREQRKKQFIIFCFGVVVLGITTVFSGWFYLNQKLNDQEQANQLITSTNQSLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGEAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDSYGSFVVTVDLGEMGGTTTDDATNTSVSTDKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=634187 LRO84_RS01580 WP_231762420.1 336519..337160(+) (pilN) [Acinetobacter calcoaceticus strain ARu19]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAACAGCGAAAAAAGCAATTTATTATTTTCTGTTTTGG
GGTAGTTGTTCTGGGGATCACCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCTA
ATCAACTCATTACCAGTACAAACCAGAGTCTAGATCAACAACTTAAAACCTTAAATGGTCTGCAAGAACAGCGTGACGCT
ATTATCGAGCGTATGAAACTTATTCAGGGATTGCAAAGTCAGCGCCCTGTTGTCGTGCGTTTGGTAGATGAATTGGTACG
TGTTACTCCTGCTGCGATGTATTTGACTAAATTTAGTCGAACTGGAGATAAATTTACCATTGAAGGTGAAGCGGAAAGTC
CAAATACGGTTGCGGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAACGCCTTTATGAACTCTTTCTTGGCG
ACTGAAGAGAAAAAAGATAAGACTGCGAGTTCGCTGCTTCCTCGAGTGGAAGATAGCTATGGCAGTTTTGTTGTGACTGT
TGATTTGGGCGAAATGGGGGGGACTACAACAGATGATGCCACCAATACGTCTGTAAGTACGGATAAGGGGGCGGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

87.324

100

0.873
  comN Acinetobacter baylyi ADP1

75.648

90.61

0.685