Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LRO55_RS01525 Genome accession   NZ_CP088954
Coordinates   320863..322977 (+) Length   704 a.a.
NCBI ID   WP_231764484.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315863..327977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS01505 (LRO55_01505) comM 317817..318875 (+) 1059 WP_056482436.1 pilus assembly protein PilM Machinery gene
  LRO55_RS01510 (LRO55_01510) pilN 318875..319516 (+) 642 WP_017390950.1 PilN domain-containing protein Machinery gene
  LRO55_RS01515 (LRO55_01515) pilO 319513..320262 (+) 750 WP_045433421.1 type 4a pilus biogenesis protein PilO Machinery gene
  LRO55_RS01520 (LRO55_01520) pilP 320273..320800 (+) 528 WP_003653811.1 pilus assembly protein PilP Machinery gene
  LRO55_RS01525 (LRO55_01525) pilQ 320863..322977 (+) 2115 WP_231764484.1 type IV pilus secretin PilQ family protein Machinery gene
  LRO55_RS01530 (LRO55_01530) aroK 322989..323558 (+) 570 WP_003653807.1 shikimate kinase AroK -
  LRO55_RS01535 (LRO55_01535) aroB 323587..324669 (+) 1083 WP_231764485.1 3-dehydroquinate synthase -
  LRO55_RS01540 (LRO55_01540) - 324686..325567 (+) 882 WP_231764486.1 hypothetical protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 76179.46 Da        Isoelectric Point: 5.9234

>NTDB_id=634148 LRO55_RS01525 WP_231764484.1 320863..322977(+) (pilQ) [Acinetobacter calcoaceticus strain ACa13]
MNHVFRQFSMGAVAIAVMQVASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFNKAQQTLTQPKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAAIKPLSTNTIKPQGVSNVGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVRTLGSKIPAHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVSSSSKPSNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIRLSYAKAIDVLKLIEDTRDGKGAVANRTTNSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKIRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGVNSNNSLLVG
GSDTTLWNLREPDDEGKYTIERPDNLNVDLGVTSAGASSIAFSLISMSDFMLDLELSALQADGYGEVISTPKVMTADKQT
AKVATGQQVPYQTTVTSGAGATATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTNVLVN
NGETVILGGVFEQTTSNSQTKVPFFGDIPVLGHLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=634148 LRO55_RS01525 WP_231764484.1 320863..322977(+) (pilQ) [Acinetobacter calcoaceticus strain ACa13]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCCATTGCAGTTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCGACACAAATTGCAGGTCAGGGTACAGAAATTAGAGTGATGTTTAATGGTTTGCCGCCGCAACCAC
AGGCATATCAACTTGAAAATCCTTCACGTTTGATTTTGGATTTTAATAAAGCTCAGCAGACTTTAACACAGCCAAAAGTG
GCGATTGGTACAAATGAAGCGAGTTCGGTCGATGTAAGTTCTGACGATCAGCGCTCACGCTTAACTGTAAATTTAAAAGA
GGCGGGTGCGTTTACAACGCGCATAGAAGGCAATACTTTTATTTTAAAGATTAATTCAGCTCAAGCGGCTATTAAACCTT
TATCAACAAATACGATTAAACCCCAGGGTGTTTCAAATGTTGGTTTTCAGCGTGGTAGTCAAGGTGAAGGGTTAATTGTT
ATTGATTTATTGGGAAGTAATACCCCTGTTGATGTGCAACAACAAGGCAGCAAAGTTGTAGTAAGAACGCTAGGCTCTAA
AATTCCCGCCCATTTAGCTAAACGTTTAAATGTGAACGATTTTGCGACCCCTGTTTCTACCATCGAATCTTATAACGAAA
AAGGCAATGGCGTTATTACGATCCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCAGAAAATAAACTCACCATT
AGCTTAAAGCGCCCGCAGGACAAAAATGTAAGTTCTTCATCTAAGCCATCTAATTATTCTGGTAATAAACTTTCTCTCGA
TTTCCAGGATATTGAAGTTCGTAGAGTTCTTCAGTTACTTGCCGATTTTACTGGCATTAATATGGTGGCTGCCGATAGTG
TGCAGGGTAATATTACTTTGCGATTGAAAGATGTTCCGTGGGATCAGGCACTTGATATTATTTTAAAAACTAAGAATCTA
GATAAACGCAGAAATGGTAACGTTATTTGGATTGCACCTGTTGCAGAGTTGATTAAGGCTGAAGATGATGAGGCAAAAGC
TTTAGCACAAACTATTAAGTTAGCGCCGATTCAAACAGATTATATCCGTCTGAGTTATGCGAAAGCTATTGATGTACTTA
AGCTAATTGAAGATACCCGTGATGGTAAGGGGGCTGTTGCAAACCGTACCACAAATTCAGATTCTCTTGCTTTAGAGAGT
TTATTGAGCTCACGTGGTAGTGCAGTTGCCGATACGCGTACTAATACTTTGATTGTAAATGACACAGCCCAAAATATTGA
TAAAATTCGTAAAATGATTGAGTTGCTTGATGTACAAGTCAAACAGGTCATGGTTGAGGCGCGAATTGTAAGAGCATCTA
CTTCATTCACCAAAGAACTTGGCGTTAAGTGGGGAATATTATCTCAAGGGGTGAACAGTAATAACAGTTTGTTGGTGGGT
GGTAGTGATACGACGCTTTGGAATTTAAGAGAACCAGATGATGAAGGTAAATATACGATTGAACGGCCAGATAATTTAAA
CGTTGATTTGGGTGTTACATCAGCTGGAGCCAGTAGCATAGCTTTTAGCTTAATTAGTATGTCTGATTTTATGTTGGATT
TAGAGTTGTCAGCATTGCAGGCAGATGGTTATGGTGAGGTTATTTCAACACCTAAAGTCATGACAGCAGATAAACAAACT
GCCAAAGTTGCGACAGGTCAGCAGGTTCCTTATCAAACTACTGTTACTTCTGGTGCTGGTGCTACAGCTACTACATCCTT
TAAAGATGCACTTTTAAGTTTAGATGTTACTCCGAGTATTACACCTGACGGTAAAATTCAAATGAAATTAGATATTTCTA
AGGATTCTGTGGCAGGTGAAGCCCCTAATGGTGAGCTAATTTTAAATAAAAATAATATTAATACCAATGTATTGGTGAAT
AACGGTGAAACGGTCATTTTAGGAGGGGTATTTGAGCAGACCACATCTAACTCACAAACCAAGGTTCCTTTCTTTGGTGA
TATTCCTGTACTTGGGCATTTATTCAGAAAGGATGTGAAATCTGATGATAAACAAGAGTTACTGATTTTCGTTACGCCAC
GAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(39-118)

Bacterial type II and III secretion system protein (Secretin)

(538-696)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

82.548

100

0.847
  pilQ Acinetobacter baumannii strain A118

82.41

100

0.845
  comQ Acinetobacter baylyi ADP1

72.714

100

0.734
  pilQ Pseudomonas aeruginosa PAK

39.437

100

0.398