Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LRO55_RS01520 Genome accession   NZ_CP088954
Coordinates   320273..320800 (+) Length   175 a.a.
NCBI ID   WP_003653811.1    Uniprot ID   A0AAW8QTI7
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315273..325800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS01505 (LRO55_01505) comM 317817..318875 (+) 1059 WP_056482436.1 pilus assembly protein PilM Machinery gene
  LRO55_RS01510 (LRO55_01510) pilN 318875..319516 (+) 642 WP_017390950.1 PilN domain-containing protein Machinery gene
  LRO55_RS01515 (LRO55_01515) pilO 319513..320262 (+) 750 WP_045433421.1 type 4a pilus biogenesis protein PilO Machinery gene
  LRO55_RS01520 (LRO55_01520) pilP 320273..320800 (+) 528 WP_003653811.1 pilus assembly protein PilP Machinery gene
  LRO55_RS01525 (LRO55_01525) pilQ 320863..322977 (+) 2115 WP_231764484.1 type IV pilus secretin PilQ family protein Machinery gene
  LRO55_RS01530 (LRO55_01530) aroK 322989..323558 (+) 570 WP_003653807.1 shikimate kinase AroK -
  LRO55_RS01535 (LRO55_01535) aroB 323587..324669 (+) 1083 WP_231764485.1 3-dehydroquinate synthase -
  LRO55_RS01540 (LRO55_01540) - 324686..325567 (+) 882 WP_231764486.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19310.37 Da        Isoelectric Point: 9.0270

>NTDB_id=634147 LRO55_RS01520 WP_003653811.1 320273..320800(+) (pilP) [Acinetobacter calcoaceticus strain ACa13]
MKLKQISFSILACLVLVGCDSRIDAVNQQMADIRNQPPQPIDPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSIRNNRGQVLALIQSPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=634147 LRO55_RS01520 WP_003653811.1 320273..320800(+) (pilP) [Acinetobacter calcoaceticus strain ACa13]
ATGAAACTTAAGCAAATTTCTTTTTCTATTTTGGCATGTTTAGTTTTAGTCGGATGTGACTCGAGAATCGACGCTGTAAA
TCAGCAAATGGCAGATATACGTAACCAGCCACCACAGCCGATAGATCCAGCACCTGTTTTCACACCTGTACCACAATTTA
ATTATGCGGCTCATCAGCTAAAGAGTCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCAGGAAAACGG
GTATATCCGAATTTCTCACGTGCACCTCAGCCTCTAGAAAGTTATGCATTAGAATCCTTAAATATGAAAGGAAGCATACG
TAATAACCGTGGGCAAGTGCTGGCTCTTATCCAATCACCTGATCAGCAAATTGAGCGAGTGCAGGTGGGGAACTATATCG
GAATGAATCAAGGGCGTATTACCCATATTGGTCCAACCCAGATTGATCTGGTAGAAATTGTCCCCGATGGGCGCGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

89.714

100

0.897
  comL Acinetobacter baylyi ADP1

71.345

97.714

0.697