Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LRO55_RS01510 Genome accession   NZ_CP088954
Coordinates   318875..319516 (+) Length   213 a.a.
NCBI ID   WP_017390950.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313875..324516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS01490 (LRO55_01490) - 313879..314211 (+) 333 WP_003653820.1 hypothetical protein -
  LRO55_RS01495 (LRO55_01495) - 314214..315038 (+) 825 WP_231764482.1 putative RNA methyltransferase -
  LRO55_RS01500 (LRO55_01500) ponA 315093..317654 (-) 2562 WP_231764483.1 penicillin-binding protein PBP1a -
  LRO55_RS01505 (LRO55_01505) comM 317817..318875 (+) 1059 WP_056482436.1 pilus assembly protein PilM Machinery gene
  LRO55_RS01510 (LRO55_01510) pilN 318875..319516 (+) 642 WP_017390950.1 PilN domain-containing protein Machinery gene
  LRO55_RS01515 (LRO55_01515) pilO 319513..320262 (+) 750 WP_045433421.1 type 4a pilus biogenesis protein PilO Machinery gene
  LRO55_RS01520 (LRO55_01520) pilP 320273..320800 (+) 528 WP_003653811.1 pilus assembly protein PilP Machinery gene
  LRO55_RS01525 (LRO55_01525) pilQ 320863..322977 (+) 2115 WP_231764484.1 type IV pilus secretin PilQ family protein Machinery gene
  LRO55_RS01530 (LRO55_01530) aroK 322989..323558 (+) 570 WP_003653807.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23947.31 Da        Isoelectric Point: 6.4518

>NTDB_id=634145 LRO55_RS01510 WP_017390950.1 318875..319516(+) (pilN) [Acinetobacter calcoaceticus strain ACa13]
MATINLLPWRDGLREQRKKQFIIFCFGVVVLGITTVFSGWFYLNQKLNDQEQANQLITSTNQSLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDSYGSFVVTVDLGEMGVTTTDDTANTSVSTDKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=634145 LRO55_RS01510 WP_017390950.1 318875..319516(+) (pilN) [Acinetobacter calcoaceticus strain ACa13]
ATGGCAACAATTAATTTACTCCCTTGGCGCGATGGGCTTAGGGAACAGCGCAAAAAGCAATTTATTATTTTCTGTTTTGG
GGTCGTTGTTCTGGGGATCACCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCTA
ATCAACTCATCACCAGTACAAACCAGAGTCTAGATCAACAACTTAAAACCTTAAATGGTCTGCAAGAACAGCGTGACGCT
ATTATCGAGCGTATGAAACTTATTCAGGGATTGCAAAGTCAGCGCCCTGTTGTCGTGCGTTTGGTAGATGAATTGGTACG
TGTTACTCCTGCTGCGATGTATTTGACTAAATTTAGTCGAACTGGAGATAAATTTACCATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCGGAGTTATTACGTAATCTTGAAGCATCACCATGGTATCGCAACGCTTTTATGAACTCTTTCTTGGCG
ACTGAAGAGAAAAAAGATAAGACTGCGAGTTCGCTGCTTCCTCGAGTGGAAGATAGCTATGGCAGTTTTGTTGTGACTGT
TGATTTGGGCGAAATGGGGGTGACTACAACAGATGATACCGCCAATACGTCTGTAAGCACGGATAAGGGGGCGGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

73.529

95.775

0.704