Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LRK53_RS05935 Genome accession   NZ_CP088923
Coordinates   1371115..1372386 (-) Length   423 a.a.
NCBI ID   WP_027493029.1    Uniprot ID   -
Organism   Rhodanobacter thiooxydans strain FW510-R12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1366115..1377386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK53_RS05905 (LRK53_05905) - 1366967..1367761 (+) 795 WP_027493034.1 thymidylate synthase -
  LRK53_RS05910 (LRK53_05910) - 1367884..1368372 (+) 489 WP_008438579.1 dihydrofolate reductase -
  LRK53_RS05915 (LRK53_05915) - 1368372..1368800 (+) 429 WP_027493033.1 NUDIX domain-containing protein -
  LRK53_RS05920 (LRK53_05920) coaE 1368877..1369497 (-) 621 WP_027493032.1 dephospho-CoA kinase -
  LRK53_RS05925 (LRK53_05925) pilD 1369494..1370351 (-) 858 WP_027493031.1 A24 family peptidase Machinery gene
  LRK53_RS05930 (LRK53_05930) - 1370476..1370754 (-) 279 Protein_1181 endonuclease domain-containing protein -
  LRK53_RS05935 (LRK53_05935) pilC 1371115..1372386 (-) 1272 WP_027493029.1 type II secretion system F family protein Machinery gene
  LRK53_RS05940 (LRK53_05940) pilB 1372532..1374256 (-) 1725 WP_027493028.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LRK53_RS05945 (LRK53_05945) - 1374734..1374976 (+) 243 WP_027493027.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  LRK53_RS05950 (LRK53_05950) - 1374973..1375368 (+) 396 WP_027493026.1 type II toxin-antitoxin system VapC family toxin -
  LRK53_RS05955 (LRK53_05955) - 1375524..1375850 (-) 327 WP_051257590.1 DUF86 domain-containing protein -
  LRK53_RS05960 (LRK53_05960) - 1375889..1376179 (-) 291 WP_027493024.1 nucleotidyltransferase family protein -
  LRK53_RS05965 (LRK53_05965) - 1376511..1377365 (+) 855 WP_027493023.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45943.18 Da        Isoelectric Point: 10.0123

>NTDB_id=634015 LRK53_RS05935 WP_027493029.1 1371115..1372386(-) (pilC) [Rhodanobacter thiooxydans strain FW510-R12]
MATATATNINKARELGAQRAEVSKLTTYEWVALDKRGKRMKGDMPAKNATLVKAELRRQGMNPQTVRERAKPLFGSTGST
IKPGDVAIFSRQIATMMASGVPMIQAFDIIADGQKNIRFKNVLIDVKQNIEGGSSLHEALGRYPVQFDELYCNLVKAGEA
SGVLDTVLDTVATYKERTEAIKKKIKKALFYPMMVLAVVFIVVLIMLLFVVPVFAKTFQDAGAQLPAPTQLLVTASEFMQ
SYWFIVVGLIGGGIAAIVIAKKRSVKFAHFLDRMSLKMPVMGSIVRNSAIARFARTLGVTFRAGVPLVEAMDAVAGATGS
VVYGDAVKQMRDDISVGHQLQLAMKQTGLFPNMVVQMTAIGEESGALDNMLFKVAEFYEEEVSNAVDTLSTLLEPIIMVV
LGTLVGGMVVALYLPIFKLAGTF

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=634015 LRK53_RS05935 WP_027493029.1 1371115..1372386(-) (pilC) [Rhodanobacter thiooxydans strain FW510-R12]
ATGGCCACGGCTACCGCAACCAACATCAACAAGGCGCGCGAGCTCGGTGCCCAGCGGGCCGAAGTCAGCAAGCTGACCAC
CTACGAGTGGGTTGCGCTGGACAAGCGCGGCAAGCGCATGAAGGGCGACATGCCGGCGAAGAACGCCACGCTGGTCAAGG
CCGAGCTGCGCCGCCAGGGCATGAACCCGCAGACCGTGCGCGAGCGCGCCAAACCGCTGTTCGGTTCCACCGGCAGCACC
ATCAAGCCGGGCGACGTGGCCATCTTCAGCCGCCAGATCGCCACCATGATGGCGTCCGGCGTGCCGATGATCCAGGCCTT
CGACATCATCGCCGACGGCCAGAAGAACATCCGCTTCAAGAACGTCCTCATTGACGTCAAGCAGAACATCGAGGGAGGTT
CGTCGCTGCATGAAGCGCTCGGCCGCTACCCGGTGCAGTTCGACGAGCTGTACTGCAACCTGGTGAAGGCCGGCGAGGCC
TCCGGCGTGCTCGACACCGTGCTGGACACCGTCGCGACCTACAAGGAACGCACCGAGGCGATCAAGAAGAAGATCAAGAA
GGCGTTGTTCTACCCGATGATGGTGCTGGCAGTGGTGTTCATAGTCGTGCTGATCATGCTGCTGTTCGTGGTGCCGGTGT
TCGCCAAGACCTTCCAGGACGCCGGCGCGCAGCTGCCGGCCCCCACCCAGCTGCTGGTGACCGCCTCGGAGTTCATGCAG
AGCTACTGGTTCATCGTCGTCGGCCTGATCGGCGGCGGCATCGCCGCGATCGTCATTGCCAAGAAACGCTCGGTGAAGTT
CGCCCACTTCCTCGACCGCATGTCGCTGAAGATGCCGGTGATGGGCAGCATCGTGCGCAACTCGGCAATCGCCCGCTTCG
CCCGCACGCTGGGCGTGACCTTCCGCGCCGGCGTGCCGCTGGTGGAGGCGATGGACGCGGTAGCCGGCGCCACCGGCAGC
GTGGTCTATGGCGACGCGGTCAAGCAGATGCGCGACGACATCTCGGTCGGCCACCAGTTGCAGCTGGCGATGAAGCAGAC
CGGCCTGTTCCCGAACATGGTGGTGCAGATGACCGCGATCGGCGAGGAATCCGGCGCGCTGGACAACATGCTGTTCAAGG
TGGCCGAGTTCTACGAGGAAGAGGTGAGCAACGCCGTCGACACCCTCTCCACCTTGCTCGAACCGATCATCATGGTGGTG
CTGGGCACCCTGGTCGGCGGCATGGTGGTAGCCCTGTACCTGCCGATCTTCAAGCTCGCCGGCACGTTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)

Type II secretion system (T2SS), protein F (T2SSF)

(89-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.924

93.381

0.504
  pilC Pseudomonas stutzeri DSM 10701

52.273

93.617

0.489
  pilC Acinetobacter baylyi ADP1

48.768

95.981

0.468
  pilC Acinetobacter baumannii D1279779

49.242

93.617

0.461
  pilG Neisseria gonorrhoeae MS11

42.82

90.544

0.388
  pilG Neisseria meningitidis 44/76-A

42.932

90.307

0.388