Detailed information NTG0634014

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LRK53_RS05925
• Genome accession: NZ_CP088923
• Coordinates: 1369494..1370351 (-)
• Length: 285 a.a.
• NCBI ID: WP_027493031.1
• Uniprot ID: -
• Organism: Rhodanobacter thiooxydans strain FW510-R12
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1364494..1375351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRK53_RS05895 (LRK53_05895)	-	1365307..1365810 (+)	504	WP_027493036.1	TPM domain-containing protein	-
LRK53_RS05900 (LRK53_05900)	lgt	1366031..1366852 (+)	822	WP_027493035.1	prolipoprotein diacylglyceryl transferase	-
LRK53_RS05905 (LRK53_05905)	-	1366967..1367761 (+)	795	WP_027493034.1	thymidylate synthase	-
LRK53_RS05910 (LRK53_05910)	-	1367884..1368372 (+)	489	WP_008438579.1	dihydrofolate reductase	-
LRK53_RS05915 (LRK53_05915)	-	1368372..1368800 (+)	429	WP_027493033.1	NUDIX domain-containing protein	-
LRK53_RS05920 (LRK53_05920)	coaE	1368877..1369497 (-)	621	WP_027493032.1	dephospho-CoA kinase	-
LRK53_RS05925 (LRK53_05925)	pilD	1369494..1370351 (-)	858	WP_027493031.1	A24 family peptidase	Machinery gene
LRK53_RS05930 (LRK53_05930)	-	1370476..1370754 (-)	279	Protein_1181	endonuclease domain-containing protein	-
LRK53_RS05935 (LRK53_05935)	pilC	1371115..1372386 (-)	1272	WP_027493029.1	type II secretion system F family protein	Machinery gene
LRK53_RS05940 (LRK53_05940)	pilB	1372532..1374256 (-)	1725	WP_027493028.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LRK53_RS05945 (LRK53_05945)	-	1374734..1374976 (+)	243	WP_027493027.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31051.27 Da
• Isoelectric Point: 9.5220

>NTDB_id=634014 LRK53_RS05925 WP_027493031.1 1369494..1370351(-) (pilD) [Rhodanobacter thiooxydans strain FW510-R12]
MPELPFALWIALAGVLGLLVGSFLNVVILRLPERMAAAWRQEARDVLELQADATPLPPGIVREPSHCPHCKHRLSARDNI
PLFGWLLLRGRCRYCQAKISLQYPLVELLSGVLSAVIVWKFGPSWAALAGLVLTWTLIALAGIDFRTQLLPDQLTLPLLW
LGLLLSLLPMFVTAPASILAAAIGYLSLWSVYWAFKLLTGKEGMGHGDFKLLAALGAWMGPVSLLPIILLSSLIGALVGG
TLIALRRHERAIPMPFGPFLAAAGWVWFVAGADLLQGYMQLTGLR

Nucleotide

• Length: 858 bp

>NTDB_id=634014 LRK53_RS05925 WP_027493031.1 1369494..1370351(-) (pilD) [Rhodanobacter thiooxydans strain FW510-R12]
ATGCCCGAACTTCCCTTTGCCCTGTGGATCGCCCTGGCCGGCGTACTCGGCCTGCTGGTGGGCAGCTTTCTCAACGTGGT
GATCCTGCGCCTGCCCGAGCGGATGGCGGCGGCGTGGCGGCAGGAAGCGCGCGACGTGCTGGAGCTGCAGGCCGATGCCA
CGCCGCTGCCGCCGGGTATCGTGCGCGAGCCGTCGCACTGTCCGCACTGCAAGCACCGGTTGTCGGCGCGGGACAACATA
CCGCTGTTCGGCTGGCTGCTGCTGCGCGGGCGCTGCCGCTACTGCCAGGCCAAGATCTCGCTGCAGTACCCGCTGGTGGA
ACTGCTCAGCGGCGTGCTGAGTGCGGTGATCGTGTGGAAGTTCGGCCCCTCGTGGGCCGCGCTGGCCGGGCTGGTGCTGA
CCTGGACGCTGATCGCGCTGGCCGGCATCGACTTCCGCACCCAGCTGCTGCCCGACCAGCTCACCCTGCCGTTGCTGTGG
CTGGGCCTGCTGCTGTCGCTGCTGCCGATGTTCGTCACCGCGCCGGCGTCGATCCTGGCCGCGGCGATCGGCTACCTGAG
CCTGTGGAGCGTGTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCCACGGCGACTTCAAGCTGCTTGCCG
CACTGGGCGCATGGATGGGGCCGGTGTCGCTGCTGCCGATCATCCTGCTGTCCTCGCTGATCGGCGCGCTGGTCGGTGGC
ACCCTGATTGCGCTGCGCCGACACGAGCGCGCGATCCCGATGCCGTTCGGCCCGTTCCTCGCCGCCGCCGGCTGGGTCTG
GTTCGTGGCGGGTGCGGACCTGTTGCAGGGCTACATGCAACTGACCGGTCTGCGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (131-239)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	50.362	96.842	0.488
pilD	Vibrio cholerae strain A1552	50.735	95.439	0.484
pilD	Acinetobacter nosocomialis M2	49.27	96.14	0.474
pilD	Acinetobacter baumannii D1279779	48.905	96.14	0.47
pilD	Neisseria gonorrhoeae MS11	48.162	95.439	0.46