Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | STP1_RS00600 | Genome accession | NC_022737 |
| Coordinates | 148760..149077 (-) | Length | 105 a.a. |
| NCBI ID | WP_023372658.1 | Uniprot ID | - |
| Organism | Staphylococcus pasteuri SP1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 143760..154077
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STP1_RS00575 (STP1_0115) | gcvPA | 144338..145687 (-) | 1350 | WP_041613564.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| STP1_RS00580 (STP1_0116) | gcvT | 145706..146797 (-) | 1092 | WP_023372650.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| STP1_RS00585 (STP1_0117) | - | 146970..147488 (-) | 519 | WP_023372652.1 | shikimate kinase | - |
| STP1_RS00590 (STP1_0118) | - | 147647..148144 (-) | 498 | WP_023372654.1 | hypothetical protein | - |
| STP1_RS00595 (STP1_0119) | comGD | 148342..148782 (-) | 441 | WP_041613568.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| STP1_RS00600 (STP1_0120) | comGC | 148760..149077 (-) | 318 | WP_023372658.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| STP1_RS00605 (STP1_0121) | comGB | 149090..150157 (-) | 1068 | WP_023372659.1 | competence type IV pilus assembly protein ComGB | - |
| STP1_RS00610 (STP1_0122) | comGA | 150129..151103 (-) | 975 | WP_023372661.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| STP1_RS00615 (STP1_0123) | - | 151150..151773 (-) | 624 | WP_023372663.1 | MBL fold metallo-hydrolase | - |
| STP1_RS00620 (STP1_0124) | - | 151777..152100 (-) | 324 | WP_023372665.1 | MTH1187 family thiamine-binding protein | - |
| STP1_RS00625 (STP1_0125) | - | 152100..153086 (-) | 987 | WP_023372667.1 | ROK family glucokinase | - |
| STP1_RS00630 | - | 153083..153286 (-) | 204 | WP_002451885.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11612.58 Da Isoelectric Point: 8.5106
>NTDB_id=63331 STP1_RS00600 WP_023372658.1 148760..149077(-) (comGC) [Staphylococcus pasteuri SP1]
MIKPNHSFKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTANIQSTGCDAQVKMINSQIEAYSLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN
MIKPNHSFKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTANIQSTGCDAQVKMINSQIEAYSLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN
Nucleotide
Download Length: 318 bp
>NTDB_id=63331 STP1_RS00600 WP_023372658.1 148760..149077(-) (comGC) [Staphylococcus pasteuri SP1]
ATGATAAAACCCAATCACTCATTTAAAACTAAAGCTTTCACCTTAATCGAAATGCTTTTAGTATTATTAATAATTAGTTT
ATTACTCATTTTAATTATACCTAATGTCGCCAAACAAACGGCTAATATACAATCAACAGGCTGCGACGCACAAGTTAAAA
TGATTAATAGTCAAATTGAAGCCTATTCTTTAAAACATAATAGAAACCCAAATACGATACAGGATTTAATTACGGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACTATTTCAATTAGTAATGGCGAAGCGATTGCAAATTAA
ATGATAAAACCCAATCACTCATTTAAAACTAAAGCTTTCACCTTAATCGAAATGCTTTTAGTATTATTAATAATTAGTTT
ATTACTCATTTTAATTATACCTAATGTCGCCAAACAAACGGCTAATATACAATCAACAGGCTGCGACGCACAAGTTAAAA
TGATTAATAGTCAAATTGAAGCCTATTCTTTAAAACATAATAGAAACCCAAATACGATACAGGATTTAATTACGGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACTATTTCAATTAGTAATGGCGAAGCGATTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
82.474 |
92.381 |
0.762 |
| comGC | Staphylococcus aureus N315 |
82.474 |
92.381 |
0.762 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
42.424 |
94.286 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
43.617 |
89.524 |
0.39 |
| comYC | Streptococcus suis isolate S10 |
50 |
76.19 |
0.381 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
43.956 |
86.667 |
0.381 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
48.718 |
74.286 |
0.362 |
| comGC/cglC | Streptococcus mitis SK321 |
48.718 |
74.286 |
0.362 |