Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   STP1_RS00595 Genome accession   NC_022737
Coordinates   148342..148782 (-) Length   146 a.a.
NCBI ID   WP_041613568.1    Uniprot ID   -
Organism   Staphylococcus pasteuri SP1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143342..153782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STP1_RS00575 (STP1_0115) gcvPA 144338..145687 (-) 1350 WP_041613564.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  STP1_RS00580 (STP1_0116) gcvT 145706..146797 (-) 1092 WP_023372650.1 glycine cleavage system aminomethyltransferase GcvT -
  STP1_RS00585 (STP1_0117) - 146970..147488 (-) 519 WP_023372652.1 shikimate kinase -
  STP1_RS00590 (STP1_0118) - 147647..148144 (-) 498 WP_023372654.1 hypothetical protein -
  STP1_RS00595 (STP1_0119) comGD 148342..148782 (-) 441 WP_041613568.1 competence type IV pilus minor pilin ComGD Machinery gene
  STP1_RS00600 (STP1_0120) comGC 148760..149077 (-) 318 WP_023372658.1 competence type IV pilus major pilin ComGC Machinery gene
  STP1_RS00605 (STP1_0121) comGB 149090..150157 (-) 1068 WP_023372659.1 competence type IV pilus assembly protein ComGB -
  STP1_RS00610 (STP1_0122) comGA 150129..151103 (-) 975 WP_023372661.1 competence type IV pilus ATPase ComGA Machinery gene
  STP1_RS00615 (STP1_0123) - 151150..151773 (-) 624 WP_023372663.1 MBL fold metallo-hydrolase -
  STP1_RS00620 (STP1_0124) - 151777..152100 (-) 324 WP_023372665.1 MTH1187 family thiamine-binding protein -
  STP1_RS00625 (STP1_0125) - 152100..153086 (-) 987 WP_023372667.1 ROK family glucokinase -
  STP1_RS00630 - 153083..153286 (-) 204 WP_002451885.1 YqgQ family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16997.25 Da        Isoelectric Point: 10.4746

>NTDB_id=63330 STP1_RS00595 WP_041613568.1 148342..148782(-) (comGD) [Staphylococcus pasteuri SP1]
MAKRLQIKAYNYIEMLMVLFIMSILLACTISSKNLLTLSKSNDEMNINQLITQLNYVKSKAISEKQSITLMFYNQSSNIN
VKEEHGKKYQLKIKDGKIVKITKIKLLTFDKNGNINHFGSLDIKMKDSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=63330 STP1_RS00595 WP_041613568.1 148342..148782(-) (comGD) [Staphylococcus pasteuri SP1]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATTGAAATGTTAATGGTATTATTTATTATGTCAATATTATTGGC
GTGCACTATAAGTAGTAAAAATCTATTAACACTATCAAAGTCAAATGATGAAATGAATATCAATCAACTAATTACTCAAT
TGAATTATGTAAAATCAAAAGCAATTAGCGAAAAACAATCTATCACTTTAATGTTTTATAATCAATCCTCTAATATAAAT
GTTAAAGAAGAACACGGTAAAAAATATCAATTAAAAATAAAGGATGGAAAAATAGTAAAGATAACGAAAATCAAATTACT
TACTTTTGATAAAAATGGAAATATTAATCATTTTGGTTCTTTAGATATAAAAATGAAAGATTCAATATATAAGGTTATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

48.993

100

0.5
  comGD Staphylococcus aureus N315

48.993

100

0.5

Multiple sequence alignment