Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LNN31_RS19190 Genome accession   NZ_CP087994
Coordinates   4068837..4069274 (-) Length   145 a.a.
NCBI ID   WP_070370663.1    Uniprot ID   A0A231NV51
Organism   Acetobacterium wieringae strain Y     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4063837..4074274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNN31_RS19170 (LNN31_19130) rplI 4064972..4065421 (-) 450 WP_070370667.1 50S ribosomal protein L9 -
  LNN31_RS19175 (LNN31_19135) - 4065418..4067391 (-) 1974 WP_228881765.1 DHH family phosphoesterase -
  LNN31_RS19180 (LNN31_19140) - 4067388..4068341 (-) 954 WP_228881767.1 YybS family protein -
  LNN31_RS19185 (LNN31_19145) rpsR 4068591..4068818 (-) 228 WP_070370664.1 30S ribosomal protein S18 -
  LNN31_RS19190 (LNN31_19150) ssb 4068837..4069274 (-) 438 WP_070370663.1 single-stranded DNA-binding protein Machinery gene
  LNN31_RS19195 (LNN31_19155) rpsF 4069286..4069573 (-) 288 WP_070370662.1 30S ribosomal protein S6 -
  LNN31_RS19200 (LNN31_19160) - 4069686..4070318 (-) 633 WP_070370661.1 stage II sporulation protein M -
  LNN31_RS19205 (LNN31_19165) - 4070315..4070521 (-) 207 WP_070370660.1 DUF951 domain-containing protein -
  LNN31_RS19210 (LNN31_19170) - 4070511..4071407 (-) 897 WP_070370659.1 mechanosensitive ion channel family protein -
  LNN31_RS19215 (LNN31_19175) - 4071417..4072070 (-) 654 WP_228881769.1 CvpA family protein -
  LNN31_RS19220 (LNN31_19180) - 4072067..4073143 (-) 1077 WP_228881770.1 hypothetical protein -
  LNN31_RS19225 (LNN31_19185) - 4073188..4074087 (-) 900 WP_228881771.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16032.84 Da        Isoelectric Point: 5.2325

>NTDB_id=632171 LNN31_RS19190 WP_070370663.1 4068837..4069274(-) (ssb) [Acetobacterium wieringae strain Y]
MNKVILVGRLTRDPEVKNTTTGRAVASFTLAVDRRFKNKDGQKEADFVPVVVWGKQAEIAGQYLSKGSQIGVSGRLQVRS
YDAQDGQRRYVTEVVADEISFLSSGRRDSNAGFQQTSAPQSNNNMSVMGLDEDFHLMADDDDIPF

Nucleotide


Download         Length: 438 bp        

>NTDB_id=632171 LNN31_RS19190 WP_070370663.1 4068837..4069274(-) (ssb) [Acetobacterium wieringae strain Y]
GTGAATAAAGTAATTCTCGTAGGAAGACTAACCCGTGATCCTGAGGTGAAAAACACTACAACAGGCAGAGCAGTCGCTTC
ATTTACCTTAGCGGTGGATCGTCGTTTTAAAAACAAAGATGGTCAAAAAGAAGCAGACTTTGTGCCAGTCGTCGTGTGGG
GAAAACAGGCAGAAATTGCTGGACAATATTTGTCAAAGGGTAGCCAAATTGGTGTATCAGGACGACTACAGGTAAGAAGT
TACGACGCACAGGATGGTCAACGACGTTATGTGACGGAAGTTGTTGCCGATGAGATTAGTTTTCTCTCATCCGGCCGGAG
AGATTCGAACGCCGGATTCCAGCAAACTTCAGCGCCACAATCCAATAATAATATGTCAGTAATGGGATTAGATGAAGATT
TTCATCTGATGGCCGATGATGACGATATACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A231NV51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

42.012

100

0.49
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.278

99.31

0.4
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.882

70.345

0.393
  ssbA Streptococcus mutans UA159

39.583

99.31

0.393
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.45

76.552

0.386
  ssbB/cilA Streptococcus pneumoniae TIGR4

46.087

79.31

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

46.087

79.31

0.366