Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U471_RS18935 Genome accession   NC_022653
Coordinates   3900236..3900754 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens CC178     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3895236..3905754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS18905 (U471_39510) - 3896435..3896815 (-) 381 WP_012118934.1 VOC family protein -
  U471_RS18910 (U471_39520) - 3896871..3897809 (-) 939 WP_012118935.1 LacI family DNA-binding transcriptional regulator -
  U471_RS18915 (U471_39530) xth 3897872..3898630 (-) 759 WP_012118936.1 exodeoxyribonuclease III -
  U471_RS18920 (U471_39540) - 3898627..3899184 (-) 558 WP_012118937.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  U471_RS18925 (U471_39550) - 3899181..3899762 (-) 582 WP_012118938.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  U471_RS18930 rpsR 3899953..3900192 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  U471_RS18935 (U471_39560) ssbA 3900236..3900754 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  U471_RS18940 (U471_39570) rpsF 3900794..3901081 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  U471_RS18945 (U471_39580) ychF 3901193..3902293 (-) 1101 WP_012118940.1 redox-regulated ATPase YchF -
  U471_RS18950 (U471_39590) - 3902419..3904422 (-) 2004 WP_012118941.1 molybdopterin-dependent oxidoreductase -
  U471_RS18955 (U471_39600) - 3904469..3904675 (-) 207 WP_012118942.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=63204 U471_RS18935 WP_004392979.1 3900236..3900754(-) (ssbA) [Bacillus amyloliquefaciens CC178]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=63204 U471_RS18935 WP_004392979.1 3900236..3900754(-) (ssbA) [Bacillus amyloliquefaciens CC178]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment