Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LP101_RS03620 Genome accession   NZ_CP087796
Coordinates   752782..754005 (-) Length   407 a.a.
NCBI ID   WP_264675928.1    Uniprot ID   A0AAQ2T3C1
Organism   Moraxella bovis strain SAM57957     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747782..759005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP101_RS03600 (LP101_03575) - 747959..748807 (-) 849 WP_078273701.1 WG repeat-containing protein -
  LP101_RS03605 (LP101_03580) glnD 748865..751633 (-) 2769 WP_264677103.1 [protein-PII] uridylyltransferase -
  LP101_RS03615 (LP101_03590) pilD 751877..752782 (-) 906 WP_112742507.1 A24 family peptidase Machinery gene
  LP101_RS03620 (LP101_03595) pilC 752782..754005 (-) 1224 WP_264675928.1 type II secretion system F family protein Machinery gene
  LP101_RS03625 (LP101_03600) recG 754352..756445 (+) 2094 WP_264677102.1 ATP-dependent DNA helicase RecG -
  LP101_RS03630 (LP101_03605) - 756486..756653 (+) 168 WP_264677101.1 hypothetical protein -
  LP101_RS03635 (LP101_03610) - 756692..757132 (+) 441 WP_264683941.1 leucine-rich repeat domain-containing protein -
  LP101_RS03640 (LP101_03615) - 757214..757849 (+) 636 WP_264677099.1 phospholipase D-like domain-containing protein -
  LP101_RS03645 (LP101_03620) - 757822..758586 (+) 765 WP_264677098.1 hypothetical protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44889.99 Da        Isoelectric Point: 9.0694

>NTDB_id=631463 LP101_RS03620 WP_264675928.1 752782..754005(-) (pilC) [Moraxella bovis strain SAM57957]
MAKVATEQLIDFKYSGTNRRGQNVKGEMTSKSIELARAQLRKQGIIVQDIRQKPKPLFSMKKSIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLKVKADIESGSNFATALRKHPKYFDDLFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVIVVAIIVTAILLIKVVPVFAEMFEGFGAELPAFTQMVVNMSNWMAKYYLVFFGALAIIIIAF
SQAKLHSKKFRDFLDKLTLKLPIFGDIAYKAIIARFCRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATHQIKEDVATG
QQMQFAIRSTNLFPSMVVQMVGIGEEAGSLEEMLDKSATFYENEVDNAVDGLTSLMEPMIMAFLGVVIGGLVIAMYLPIF
MMGDVIG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=631463 LP101_RS03620 WP_264675928.1 752782..754005(-) (pilC) [Moraxella bovis strain SAM57957]
ATGGCAAAAGTAGCAACTGAACAGTTAATTGATTTTAAATACTCGGGCACCAACCGACGTGGACAAAACGTCAAGGGTGA
GATGACCTCTAAGAGCATTGAACTTGCTCGTGCCCAACTACGCAAGCAGGGCATCATCGTTCAAGACATCCGCCAAAAGC
CCAAACCGTTATTTAGCATGAAGAAGTCAATTAAAGCCATTGATATTGCCATTTTTGTGCGTCAGCTTGCCACCATGATG
AAAGCAGGTGTACCACTAACACAGTCCTTTGAGATTGTCGCCGATTCACTTGACAATCCTAGCATGAAAGACTTAGTATT
AAAAGTTAAAGCTGACATTGAATCAGGGAGCAACTTTGCTACCGCCTTACGTAAGCACCCCAAATACTTTGATGACCTCT
TTTGTTCATTAGTCGAGTCAGGTGAGCAGTCAGGTGCGTTAGAGACCATGCTTGAACGTGTCGCCACCTATAAAGAGAAA
AGCGAGCTGTTAAAAGCAAAAATTAAAAAAGCGATGAAATATCCAATTGCAGTCATTGTAGTTGCCATCATTGTTACTGC
CATTTTGCTTATTAAGGTTGTCCCTGTTTTTGCTGAAATGTTTGAAGGTTTTGGAGCTGAACTGCCAGCATTCACTCAAA
TGGTAGTCAATATGTCAAACTGGATGGCAAAATACTATTTGGTTTTTTTTGGTGCATTGGCAATTATTATTATCGCATTT
AGCCAAGCAAAACTACACTCTAAAAAGTTTCGTGACTTTTTGGATAAACTGACCTTGAAGTTACCCATATTTGGTGACAT
TGCTTATAAAGCCATCATTGCTCGTTTTTGTCGCACTTTATCGACAACTTTTGCTGCCGGTGTACCTTTGATTGATGCTC
TAGACTCTACCGCAGGGGCAACCAATAACGTGGTCTTCTATAATGCCACTCATCAAATAAAAGAAGATGTCGCCACTGGT
CAGCAAATGCAGTTTGCCATCCGTAGCACCAATCTCTTTCCTAGCATGGTGGTACAGATGGTCGGTATTGGTGAAGAAGC
TGGTAGTCTAGAAGAGATGCTTGATAAATCCGCTACTTTTTATGAAAATGAAGTGGACAATGCTGTTGATGGCTTAACCA
GTTTGATGGAACCCATGATTATGGCATTTTTAGGCGTGGTTATTGGTGGTTTAGTCATCGCCATGTATCTACCAATCTTC
ATGATGGGCGATGTTATCGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

66.176

100

0.663
  pilC Acinetobacter baylyi ADP1

62.99

100

0.631
  pilC Pseudomonas stutzeri DSM 10701

61.772

97.052

0.6
  pilC Legionella pneumophila strain ERS1305867

55.138

98.034

0.541
  pilG Neisseria meningitidis 44/76-A

46.875

94.349

0.442
  pilG Neisseria gonorrhoeae MS11

46.875

94.349

0.442
  pilC Vibrio cholerae strain A1552

43.137

100

0.432
  pilC Vibrio campbellii strain DS40M4

39.901

99.754

0.398