Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LPS07_RS17445 Genome accession   NZ_CP087716
Coordinates   3622025..3622351 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain AP2044     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3617025..3627351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS17425 (LPS07_17425) - 3617126..3617752 (-) 627 WP_005065779.1 FHA domain-containing protein -
  LPS07_RS17430 (LPS07_17430) gspD 3617793..3620069 (-) 2277 WP_005065777.1 type II secretion system secretin GspD -
  LPS07_RS17435 (LPS07_17435) - 3620111..3620947 (-) 837 WP_005065775.1 type II secretion system protein N -
  LPS07_RS17440 (LPS07_17440) gspN 3620947..3621690 (-) 744 WP_032005861.1 type II secretion system protein N -
  LPS07_RS17445 (LPS07_17445) hns 3622025..3622351 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LPS07_RS17450 (LPS07_17450) - 3622546..3622986 (-) 441 WP_230445087.1 acyl-CoA thioesterase -
  LPS07_RS17455 (LPS07_17455) - 3622994..3624187 (-) 1194 WP_005065771.1 hypothetical protein -
  LPS07_RS17460 (LPS07_17460) - 3624197..3625039 (-) 843 WP_032063108.1 hypothetical protein -
  LPS07_RS17465 (LPS07_17465) hemD 3625048..3625815 (-) 768 WP_005065765.1 uroporphyrinogen-III synthase -
  LPS07_RS17470 (LPS07_17470) hemC 3625819..3626736 (-) 918 WP_031945258.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=631226 LPS07_RS17445 WP_000801427.1 3622025..3622351(-) (hns) [Acinetobacter pittii strain AP2044]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=631226 LPS07_RS17445 WP_000801427.1 3622025..3622351(-) (hns) [Acinetobacter pittii strain AP2044]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1