Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LPS07_RS01530 Genome accession   NZ_CP087716
Coordinates   324738..326864 (+) Length   708 a.a.
NCBI ID   WP_069120196.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319738..331864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS01510 (LPS07_01510) comM 321689..322747 (+) 1059 WP_069120207.1 pilus assembly protein PilM Machinery gene
  LPS07_RS01515 (LPS07_01515) pilN 322747..323388 (+) 642 WP_069120205.1 PilN domain-containing protein Machinery gene
  LPS07_RS01520 (LPS07_01520) pilO 323385..324137 (+) 753 WP_069120201.1 type 4a pilus biogenesis protein PilO Machinery gene
  LPS07_RS01525 (LPS07_01525) pilP 324148..324675 (+) 528 WP_069120199.1 pilus assembly protein PilP Machinery gene
  LPS07_RS01530 (LPS07_01530) pilQ 324738..326864 (+) 2127 WP_069120196.1 type IV pilus secretin PilQ Machinery gene
  LPS07_RS01535 (LPS07_01535) aroK 326876..327445 (+) 570 WP_002116987.1 shikimate kinase AroK -
  LPS07_RS01540 (LPS07_01540) aroB 327474..328556 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -
  LPS07_RS01545 (LPS07_01545) - 328573..329442 (+) 870 WP_230445121.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76750.16 Da        Isoelectric Point: 6.5448

>NTDB_id=631192 LPS07_RS01530 WP_069120196.1 324738..326864(+) (pilQ) [Acinetobacter pittii strain AP2044]
MNHVFRQFSMGAVAIAIMQIASAQVSMTNIVPTQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLTQSKV
AIGTDEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAHVVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVKTLGSKIPTHLTKRLNVNDFATPVSTIESYNDKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKSVNISSKPSNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIRLNYAKAADVLKLIEETRDGKTAVANRTAGSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLIDVQIKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQPARVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=631192 LPS07_RS01530 WP_069120196.1 324738..326864(+) (pilQ) [Acinetobacter pittii strain AP2044]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGATTGCGTCTGCACAGGTCAGCAT
GACTAATATTGTACCGACGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCATATCAGCTTGAGAATCCTTCACGTTTGATTTTAGACTTTAATAAAGCGCAGCAGAATTTAACACAGTCAAAAGTG
GCGATTGGAACGGATGAAGCGAGTTCGGTCGATGTAAGCTCTGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACTACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCACGTTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGTCTTATTGTT
ATTGACCTGTTGGGGAGTAATACCCCTGTTGATGTGCAACAACAAGGCAGCAAAGTTGTAGTAAAAACTTTGGGTTCTAA
AATTCCTACTCATTTAACTAAGCGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCTTATAATGATA
AAGGCAACGGTGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACCATC
AGCCTCAAGCGTCCTCAAGATAAAAGTGTAAACATTTCATCTAAACCATCTAATTATTCTGGTAATAAGCTTTCTCTTGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAATTACTTGCTGATTTTACTGGCATTAATATGGTTGCGGCTGACAGTG
TGCAAGGTAACATCACTTTGCGCTTAAAAGATGTTCCATGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGTAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCAGAAGACGATGAGGCAAAAGC
TTTAGCACAAACTATTAAATTGGCACCGATCCAAACAGATTATATTCGTTTGAATTATGCAAAAGCAGCAGATGTCCTTA
AACTAATTGAAGAGACTCGTGATGGCAAGACAGCTGTCGCAAATCGTACAGCAGGTTCAGACTCTCTTGCTTTAGAAAGC
TTATTAAGCTCAAGAGGTAGTGCTGTTGCCGATACGCGTACTAATACTTTGATTGTAAATGATACAGCCCAAAATATTGA
TAAAGTTCGTAAAATGATTGATTTGATTGATGTACAGATCAAACAAGTCATGGTGGAAGCTCGAATTGTAAGAGCCTCTA
CTTCTTTTACTAAAGAGCTCGGTGTTAAATGGGGAATATTATCGCAAGGGATTACCAACAATAATAATTTATTAGTTGGT
GGTAGCGAAACGACCTTATGGAATTTACGAGAGCCCAAAAAGGATGAGACTACGGGTGGTTATAAATACACGATTGAACG
TCCAGATAACTTAAATGTCGATTTGGGTGTAACTAATCCAGCTGGAAGTATTGCCTTTGGCTTGATTAGTATGTCTGATT
TTATGCTTGATCTCGAACTTTCTGCATTACAAGCTGATGGCTATGGTGAGGTGATTTCCACACCTAAAGTGATGACCGCA
GATAAACAACCTGCGAGAGTGGCAACAGGTCAACAAGTTCCTTATCAAACCACGACGAATTCTGCTGCGGGTGCCACAGC
AAGTACATCATTTAAAGATGCACTATTAAGCCTAGATGTTACCCCGAGTATTACGCCTGACGGTAAAATTCAAATGAAAT
TGGATATTTCTAAGGATTCTGTAGCCGGCGAAGCACCTAATGGTGAATTAATTTTAAATAAAAATAATATTAATACCAAT
GTACTTGTTAATAATGGTGAGACAGTCATTTTAGGAGGGGTGTTTGAGCAGACTACTTCTAATTCACAAACCAAGGTTCC
TTTCTTTGGAGACATTCCTGTAGTTGGGCGTTTATTTAGAAAAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTT
TCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-118)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

84.466

100

0.86
  pilQ Acinetobacter baumannii strain A118

84.327

100

0.859
  comQ Acinetobacter baylyi ADP1

73.184

100

0.74
  pilQ Pseudomonas aeruginosa PAK

39.829

99.294

0.395