Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LPS07_RS01515 Genome accession   NZ_CP087716
Coordinates   322747..323388 (+) Length   213 a.a.
NCBI ID   WP_069120205.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317747..328388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS01500 (LPS07_01500) rrmA 318050..318874 (+) 825 WP_081318661.1 putative RNA methyltransferase -
  LPS07_RS01505 (LPS07_01505) ponA 318966..321527 (-) 2562 WP_069120210.1 penicillin-binding protein PBP1a -
  LPS07_RS01510 (LPS07_01510) comM 321689..322747 (+) 1059 WP_069120207.1 pilus assembly protein PilM Machinery gene
  LPS07_RS01515 (LPS07_01515) pilN 322747..323388 (+) 642 WP_069120205.1 PilN domain-containing protein Machinery gene
  LPS07_RS01520 (LPS07_01520) pilO 323385..324137 (+) 753 WP_069120201.1 type 4a pilus biogenesis protein PilO Machinery gene
  LPS07_RS01525 (LPS07_01525) pilP 324148..324675 (+) 528 WP_069120199.1 pilus assembly protein PilP Machinery gene
  LPS07_RS01530 (LPS07_01530) pilQ 324738..326864 (+) 2127 WP_069120196.1 type IV pilus secretin PilQ Machinery gene
  LPS07_RS01535 (LPS07_01535) aroK 326876..327445 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23873.36 Da        Isoelectric Point: 6.4518

>NTDB_id=631189 LPS07_RS01515 WP_069120205.1 322747..323388(+) (pilN) [Acinetobacter pittii strain AP2044]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRSGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTPLGTDKGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=631189 LPS07_RS01515 WP_069120205.1 322747..323388(+) (pilN) [Acinetobacter pittii strain AP2044]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAACGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAAGCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGGGTGACCACAACAGATGATACCGCCAATACGCCTTTAGGTACGGATAAGGGGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

71.22

96.244

0.685