Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   N5877_RS17510 Genome accession   NZ_CP104586
Coordinates   3781158..3781754 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain WTJH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3776158..3786754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5877_RS17500 (N5877_17500) - 3777438..3779909 (-) 2472 WP_019726988.1 penicillin-binding protein 1A -
  N5877_RS17505 (N5877_17505) pilM 3780094..3781158 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  N5877_RS17510 (N5877_17510) pilN 3781158..3781754 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  N5877_RS17515 (N5877_17515) pilO 3781751..3782374 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  N5877_RS17520 (N5877_17520) comL/pilP 3782371..3782895 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  N5877_RS17525 (N5877_17525) pilQ 3782949..3785093 (+) 2145 WP_019726987.1 type 4a pilus secretin PilQ Machinery gene
  N5877_RS17530 (N5877_17530) aroK 3785105..3785623 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=631191 N5877_RS17510 WP_003095839.1 3781158..3781754(+) (pilN) [Pseudomonas aeruginosa strain WTJH6]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=631191 N5877_RS17510 WP_003095839.1 3781158..3781754(+) (pilN) [Pseudomonas aeruginosa strain WTJH6]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369