Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LO767_RS00770 Genome accession   NZ_CP087705
Coordinates   158354..160426 (+) Length   690 a.a.
NCBI ID   WP_233048950.1    Uniprot ID   -
Organism   Halopseudomonas aestusnigri strain GOM5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 153354..165426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO767_RS00750 (LO767_00750) pilM 155508..156572 (+) 1065 WP_228245562.1 pilus assembly protein PilM Machinery gene
  LO767_RS00755 (LO767_00755) - 156572..157150 (+) 579 WP_233048949.1 PilN domain-containing protein -
  LO767_RS00760 (LO767_00760) - 157147..157770 (+) 624 WP_088277117.1 type 4a pilus biogenesis protein PilO -
  LO767_RS00765 (LO767_00765) pilP 157785..158297 (+) 513 WP_233049927.1 type 4a pilus biogenesis lipoprotein PilP -
  LO767_RS00770 (LO767_00770) pilQ 158354..160426 (+) 2073 WP_233048950.1 type IV pilus secretin PilQ Machinery gene
  LO767_RS00775 (LO767_00775) aroK 160432..160941 (+) 510 WP_233048951.1 shikimate kinase AroK -
  LO767_RS00780 (LO767_00780) aroB 161026..162105 (+) 1080 WP_233048952.1 3-dehydroquinate synthase -
  LO767_RS00785 (LO767_00785) - 162102..163697 (+) 1596 WP_233048953.1 AAA family ATPase -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 74278.99 Da        Isoelectric Point: 4.5016

>NTDB_id=631078 LO767_RS00770 WP_233048950.1 158354..160426(+) (pilQ) [Halopseudomonas aestusnigri strain GOM5]
MSLTRIIPLAAVMALLSPLALAADLQKMDVASLPGDRVELKLSFDEPVTGSPKGYTIDQPARIALDLPGVKNKLGERSRE
LGLGNARSVTVVEAGDRTRLIINLTSLAPYTTRAEGNDLYVMVGSAATAAASTSSASAPVVTNSNWRSGDEPALSSATVS
GRAISSLDFQRGEDGSGNVIIDLSDPSIKVDVEEQGGRVKLNFPNTRLPDELRVQLDVKDFATPVNFVNASGSGNNASIV
IEPTGYYEHLVYQADNRLTVSFKPLTRAEVEQRRADAFTYTGEKLSLNFQDIEVRSVLQLIADFTDLNLVASDTVQGSIT
LRLQNVPWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKASDIAKLFASV
TAADADSQRGSLTVDERTNSIIALETQEKLDELRRIVTQLDIPVRQVMIEARIVEANVGFDKALGVNWSGELSLGNSDKY
RLYGDNGLASTANAPFVDLGVKAATSGIGIGFVTDNTVLDLQLSAMESTGNGEVISQPKVVTSDKETAKILKGSEIPYQE
ASSSGATTTRFADAVLSLEVTPQITPDNQVIMEVIVTKDEPDFSNQVNGVPTIRKNEVNANILVADGETIVIGGVFQSET
STSQEKVPFLGDLPLLGKMFRRDITAESKTELLIFLTPRIINNGAITLAR

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=631078 LO767_RS00770 WP_233048950.1 158354..160426(+) (pilQ) [Halopseudomonas aestusnigri strain GOM5]
ATGTCTCTGACCAGAATTATTCCGCTCGCAGCAGTGATGGCACTGTTGAGCCCGCTGGCCCTCGCGGCCGATCTGCAAAA
AATGGATGTCGCTTCCCTGCCCGGTGATCGGGTGGAGCTGAAGCTGAGCTTTGATGAGCCGGTCACCGGTTCGCCAAAGG
GCTACACCATCGACCAGCCGGCGCGTATCGCGCTGGACCTGCCTGGCGTCAAGAACAAGCTCGGCGAGCGCAGCCGCGAG
CTTGGGCTCGGCAATGCCCGCAGTGTGACGGTTGTCGAGGCTGGCGACCGAACCCGCTTGATTATCAATCTGACCAGTCT
GGCGCCGTATACCACACGCGCCGAAGGCAATGACTTGTATGTGATGGTCGGGTCAGCGGCGACCGCCGCTGCGTCGACCT
CCAGCGCTTCCGCTCCGGTCGTGACCAATAGTAACTGGCGCTCCGGTGATGAGCCTGCGCTGTCCAGTGCAACCGTCAGT
GGTCGGGCTATCAGCAGCCTGGATTTCCAGCGCGGTGAGGATGGTTCGGGCAACGTCATCATTGATCTGAGTGATCCGAG
CATCAAGGTGGATGTCGAGGAGCAGGGTGGGCGCGTCAAGCTGAACTTCCCGAATACCCGTCTTCCTGATGAACTGCGCG
TGCAGTTGGACGTCAAGGACTTCGCCACCCCGGTTAACTTCGTTAACGCCAGCGGCAGTGGTAACAATGCCTCCATCGTC
ATCGAGCCGACGGGCTATTACGAGCATCTCGTCTATCAGGCGGACAATCGCCTGACGGTCAGCTTCAAGCCGCTGACCCG
CGCTGAAGTCGAGCAGCGCCGCGCTGATGCCTTTACCTACACCGGCGAAAAGCTGTCGCTCAACTTCCAGGATATTGAAG
TCCGCTCTGTGTTGCAGTTGATTGCGGATTTCACCGACCTCAACCTGGTTGCCAGTGACACCGTTCAAGGCAGCATTACC
CTTCGCCTGCAAAATGTGCCGTGGGATCAGGCGCTGGACCTGGTGCTGAAGACGAAAGGGCTGGATAAGCGTCAGGTCGG
TAACGTCTTGCTGGTGGCACCGGCTGACGAGATTGCCGCGCGTGAACGCCAAGAGCTCGAGGCGCAGAAGCAGATCGCCG
AGCTGGCCCCGCTGCGTCGTGAGCTGATTCAGGTCAATTACGCCAAGGCTTCGGATATCGCCAAGCTGTTCGCCTCCGTG
ACGGCCGCTGATGCGGACTCTCAGCGAGGCTCGCTCACCGTGGACGAGCGCACCAACAGCATCATCGCGCTGGAGACTCA
GGAGAAGCTGGATGAGTTGCGTCGTATTGTTACCCAGCTGGATATTCCAGTTCGCCAGGTGATGATCGAAGCGCGCATCG
TTGAGGCTAATGTCGGCTTCGACAAGGCGCTGGGCGTTAACTGGAGTGGCGAGCTGAGTCTGGGCAACAGCGACAAGTAT
CGTCTGTACGGTGACAACGGTCTGGCCTCAACAGCGAATGCACCTTTTGTTGATCTGGGTGTGAAGGCGGCCACCTCCGG
TATTGGTATTGGCTTCGTTACCGATAATACGGTTTTGGATCTGCAGCTCTCCGCGATGGAGAGCACAGGTAACGGTGAAG
TTATTTCCCAGCCGAAGGTGGTTACATCGGACAAGGAAACCGCCAAGATTCTGAAAGGTTCGGAGATTCCTTACCAGGAA
GCTAGCTCCAGCGGCGCGACTACTACGCGCTTTGCTGATGCGGTGCTTTCTCTTGAGGTGACCCCGCAGATCACGCCGGA
CAACCAGGTGATCATGGAAGTGATCGTCACCAAGGATGAGCCCGACTTCTCCAATCAGGTGAATGGTGTGCCGACCATCC
GCAAGAACGAAGTCAACGCGAATATCCTGGTAGCCGATGGTGAGACCATTGTGATTGGTGGTGTGTTCCAGAGCGAAACC
TCCACCTCTCAGGAGAAGGTGCCTTTCCTTGGTGATCTGCCGCTGCTGGGCAAGATGTTCCGTCGCGATATCACTGCTGA
GAGCAAGACCGAGCTGCTGATTTTCCTGACGCCGCGTATCATCAATAACGGTGCAATCACGCTGGCCAGGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(525-681)

AMIN domain (AMIN)

(42-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(382-446)

Secretin and TonB N terminus short domain (STN)

(308-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

68.503

100

0.703
  pilQ Acinetobacter baumannii strain A118

39.456

100

0.42
  pilQ Acinetobacter baumannii D1279779

39.456

100

0.42
  comQ Acinetobacter baylyi ADP1

41.21

100

0.414
  pilQ Legionella pneumophila strain ERS1305867

39.028

98.406

0.384
  pilQ Legionella pneumophila strain Lp02

39.169

97.681

0.383