Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   N597_RS01085 Genome accession   NC_022582
Coordinates   228187..230172 (+) Length   661 a.a.
NCBI ID   WP_023022217.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 223187..235172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS01070 (N597_01105) - 223833..224405 (+) 573 WP_023022213.1 hypothetical protein -
  N597_RS01075 (N597_01110) pbp3 224625..225857 (-) 1233 WP_196805883.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  N597_RS01080 (N597_01115) amiA3 226042..228006 (+) 1965 WP_023022215.1 peptide ABC transporter substrate-binding protein Regulator
  N597_RS01085 (N597_01120) amiA3 228187..230172 (+) 1986 WP_023022217.1 peptide ABC transporter substrate-binding protein Regulator
  N597_RS01090 (N597_01125) amiC 230237..231736 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  N597_RS01095 (N597_01130) amiD 231736..232662 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator
  N597_RS01100 (N597_01135) amiE 232674..233741 (+) 1068 WP_023022224.1 ABC transporter ATP-binding protein Regulator
  N597_RS01105 (N597_01140) amiF 233751..234674 (+) 924 WP_023022226.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73049.97 Da        Isoelectric Point: 4.8278

>NTDB_id=62887 N597_RS01085 WP_023022217.1 228187..230172(+) (amiA3) [Streptococcus ilei]
MKKSKVFAFAGVTLLAATFLAACSGSKDSKSASKKDTTYGYVYNDDPTTLDYTVSSKASVHDITTNGVDGLLENDKYGNL
VPSIAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAHDFVTGLKHAADKKSESLPLVKDSIKGLKDYSEGKISDFS
EVGVKAVDDYTLEYTLNQPETFWNSKTTNGVLFPISTDFLKSKGDEFGQPGNVKSILFNGPFLLKSITSKSEITFEKNEE
YWDKDNVHIDKIKFSYYDGSDQDSLARGFSDGSYSQARLFPASSNFASVEEKYKDNIYNTQPGSGVAVLGFNIDRQAYNH
TSKTSDEQKSSTKKAILNKNFRQAITFALNRENYSAQVNGKDYAKAAIRNMYTAPAFVQVNGKDFGDVVADKLQTYGDQW
SGVNLADGQNGLYSKEKAKAQFEKAKAELQKDGVQFPIHLDVPVAQNSTNFVSRMQSFKQSVEETLGTENVVVDLQMMDQ
DEVLNITLNVPSAAETDWDLQGLVGWNPDYDDPSTYLDTLQPSSPDQTKTYLGFAGGVDNASAKAVGLDEYAKLLDDAEK
ETLDVVTRYEKFAAAQAWLTDSALVIPTMTSAGAATVVSKVVPFSGPSSQTGNKGSTYFKYVEVQDEPVTKKQYDQEREK
WLKEKADSNKKAQQELEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=62887 N597_RS01085 WP_023022217.1 228187..230172(+) (amiA3) [Streptococcus ilei]
ATGAAAAAAAGTAAAGTTTTTGCATTTGCCGGAGTAACATTGCTCGCAGCAACTTTCCTTGCAGCATGTTCTGGCTCAAA
AGATAGCAAGTCTGCATCAAAAAAAGATACAACATATGGCTATGTTTATAACGATGATCCAACAACTTTGGATTACACTG
TATCTTCAAAAGCTTCCGTACACGATATTACAACAAACGGTGTAGATGGTTTGTTGGAGAACGACAAGTACGGGAACCTT
GTACCATCTATTGCTGAAGATTGGTCTGTTTCAAAAGACGGTTTGACCTATACTTACAAAATCCGTAAGGGTGTTAAATG
GTATGATGCTGATGGTGAAGAGCATGGTGAAGTAACAGCTCATGACTTTGTTACTGGATTGAAGCATGCGGCGGATAAAA
AATCAGAATCTCTTCCATTGGTAAAAGACTCAATCAAAGGATTGAAAGACTACTCAGAAGGAAAAATTTCAGATTTCTCT
GAGGTTGGAGTCAAAGCAGTGGATGACTATACTCTTGAGTATACTTTGAACCAACCAGAAACTTTCTGGAATTCAAAAAC
AACTAATGGTGTTCTTTTCCCAATTAGTACAGATTTCTTGAAGAGCAAGGGTGATGAATTTGGTCAACCAGGTAATGTTA
AATCAATCTTGTTCAATGGTCCATTCCTTTTGAAATCAATCACTTCTAAATCAGAAATCACTTTTGAAAAGAATGAAGAG
TATTGGGATAAAGACAACGTTCATATCGACAAGATCAAATTCTCTTATTATGATGGATCAGACCAAGATTCATTGGCGCG
TGGCTTTAGCGATGGTTCATATTCCCAAGCTCGTCTATTCCCTGCTAGCTCTAACTTTGCGTCTGTTGAAGAAAAATACA
AAGATAATATCTACAACACACAGCCTGGTTCTGGTGTAGCAGTCTTAGGTTTCAACATTGACCGTCAAGCCTACAACCAT
ACTTCTAAGACGTCAGATGAGCAGAAATCTTCTACTAAGAAAGCTATATTAAACAAGAATTTCCGTCAAGCGATCACCTT
TGCCTTGAACCGTGAGAATTATTCAGCGCAAGTCAATGGTAAAGACTATGCTAAGGCTGCTATTCGGAATATGTACACCG
CACCTGCCTTTGTTCAAGTAAATGGTAAAGACTTTGGTGATGTAGTAGCAGACAAGTTGCAAACTTATGGAGATCAATGG
AGTGGTGTGAATCTTGCAGACGGTCAAAACGGACTCTATAGCAAGGAAAAAGCAAAAGCTCAGTTTGAAAAAGCAAAAGC
TGAACTCCAAAAAGATGGTGTTCAATTCCCAATCCACTTGGATGTTCCGGTTGCACAAAACTCAACAAACTTTGTGTCAC
GGATGCAATCCTTCAAACAATCAGTTGAAGAAACACTTGGTACAGAAAACGTTGTTGTGGACCTTCAAATGATGGACCAA
GATGAAGTCTTGAACATTACATTGAACGTACCATCAGCTGCAGAAACTGACTGGGATCTTCAAGGGCTTGTAGGATGGAA
CCCAGACTACGATGACCCATCTACTTACCTTGATACCTTGCAACCATCTTCACCAGACCAAACTAAAACTTACCTTGGAT
TTGCTGGTGGTGTAGATAATGCTTCTGCTAAGGCTGTTGGCTTAGATGAATATGCGAAGTTGCTTGATGATGCAGAAAAA
GAAACCCTAGACGTAGTGACTCGTTATGAAAAATTTGCAGCAGCGCAAGCTTGGTTAACAGATAGCGCATTAGTGATTCC
AACTATGACTAGCGCTGGAGCAGCTACAGTTGTTTCAAAAGTAGTTCCATTCTCTGGACCTTCATCACAAACAGGTAACA
AAGGATCAACTTATTTCAAATATGTTGAAGTTCAAGATGAACCTGTCACTAAAAAACAATATGATCAAGAACGTGAAAAA
TGGTTGAAAGAAAAAGCTGATTCAAATAAAAAAGCTCAGCAAGAACTAGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.729

100

0.599
  amiA3 Streptococcus thermophilus LMG 18311

59.276

100

0.595
  amiA Streptococcus salivarius strain HSISS4

59.063

100

0.592

Multiple sequence alignment