Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   N597_RS01080 Genome accession   NC_022582
Coordinates   226042..228006 (+) Length   654 a.a.
NCBI ID   WP_023022215.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 221042..233006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS01060 (N597_01095) sufU 221821..222255 (+) 435 WP_023022211.1 Fe-S cluster assembly sulfur transfer protein SufU -
  N597_RS01065 (N597_01100) sufB 222400..223812 (+) 1413 WP_023022212.1 Fe-S cluster assembly protein SufB -
  N597_RS01070 (N597_01105) - 223833..224405 (+) 573 WP_023022213.1 hypothetical protein -
  N597_RS01075 (N597_01110) pbp3 224625..225857 (-) 1233 WP_196805883.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  N597_RS01080 (N597_01115) amiA3 226042..228006 (+) 1965 WP_023022215.1 peptide ABC transporter substrate-binding protein Regulator
  N597_RS01085 (N597_01120) amiA3 228187..230172 (+) 1986 WP_023022217.1 peptide ABC transporter substrate-binding protein Regulator
  N597_RS01090 (N597_01125) amiC 230237..231736 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  N597_RS01095 (N597_01130) amiD 231736..232662 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72707.73 Da        Isoelectric Point: 4.7681

>NTDB_id=62886 N597_RS01080 WP_023022215.1 226042..228006(+) (amiA3) [Streptococcus ilei]
MKVNKRFVLAGVSLASALLLTACGGGSSNQSTYSYIYSTDPNTLDYIASTRTTTSDITSNLVDGLLENDKYGNLIPSLAE
DWTVSEDGLVYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVEAKSEGLFLIQNSIKGLDAFVKGETKDFNTVGVKA
LDDYTVQYTLERPESFWNSKTTSGVLFPVNKAFLESQGKDFGSLKPSSILYNGPYYLKNLTSKSQIELVKNKEYYDEKNV
HIDNVKLTYNDGSDPESVIKKFENGQYSFATVMPNSSTYKNVKKKFGDNIVYGVQYGTSYYLGFNIDRQKYNHTAKTTDA
QKSSTKQAILNKDFRQAVNFAFDREAYAAQTSGADAATKILRNTLVPPTFVQVNGEEFGKVVEKQLVTYGDEWKDVNLDD
AQTTLYNQEKAKAEFAKAKEQLQKEGVEFPIHLDYVVSQTDNSQVQQASSFKQSVEAVLGADNVVVDIQKLSDDDFNNIT
YFTDTAAEKDYDLAGGGWVPDYQDPSTYLESLSPVNGSVFYYLGVDAGSNSPAITAVDFGKYAELLKDANAEVNDQALRY
EKYAAAQAWLTDSSLILPTVSNGGTPMLQRTVPYSRAASWVGTKGTGTNYKYLELSEEVIKTKDYDASKEKWLKEKAESN
KKAQEELKNHIESK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=62886 N597_RS01080 WP_023022215.1 226042..228006(+) (amiA3) [Streptococcus ilei]
ATGAAAGTAAATAAACGGTTCGTACTGGCCGGTGTTTCTCTAGCCAGTGCTCTTCTATTGACAGCCTGTGGCGGTGGAAG
TAGCAATCAATCTACTTATTCTTATATTTATTCAACAGATCCAAATACTTTGGACTACATTGCCTCGACTCGTACAACAA
CGTCTGATATTACAAGTAACCTTGTTGATGGTTTGTTAGAAAATGATAAATATGGAAATTTAATCCCAAGTTTGGCAGAA
GACTGGACTGTTTCGGAAGATGGCTTGGTGTATACCTATAAACTTCGAAAAGATGCAAAATGGTATACCAGTGAGGGAGA
AGAGTATGGTGCTGTAACAGCCCAGGACTTTGTGACAGGTATCAAACACGCTGTGGAAGCAAAATCTGAGGGTCTTTTCT
TAATCCAAAATTCGATTAAAGGCTTAGATGCATTTGTCAAAGGTGAAACAAAAGATTTCAATACAGTTGGCGTGAAAGCC
CTAGATGATTATACCGTTCAATATACCTTGGAACGTCCAGAAAGTTTTTGGAATTCTAAGACGACCTCAGGCGTCCTCTT
CCCGGTTAACAAAGCTTTCTTAGAATCTCAAGGGAAAGACTTCGGTTCTTTGAAGCCAAGTAGTATTCTCTATAATGGTC
CATATTATTTGAAGAATTTAACTTCAAAATCTCAAATTGAGCTTGTAAAAAATAAAGAATACTATGATGAAAAGAATGTT
CATATTGATAATGTGAAGTTGACCTACAATGACGGGTCAGATCCAGAATCTGTTATCAAGAAATTTGAGAATGGACAATA
TTCATTTGCGACAGTAATGCCAAATAGCTCCACTTATAAGAATGTGAAAAAGAAATTTGGTGATAATATTGTTTATGGTG
TTCAATACGGAACATCATACTACCTAGGCTTCAACATTGATCGTCAGAAGTATAACCATACAGCTAAAACGACAGATGCT
CAAAAATCATCCACAAAACAAGCAATTTTAAACAAAGATTTCCGTCAAGCTGTGAATTTTGCCTTTGACCGTGAAGCCTA
TGCAGCTCAAACATCAGGAGCAGATGCAGCGACCAAAATCCTTCGGAATACCTTGGTTCCACCGACTTTTGTTCAAGTGA
ATGGCGAAGAGTTCGGTAAGGTTGTTGAGAAGCAATTAGTGACCTATGGAGATGAGTGGAAAGATGTAAACCTAGATGAT
GCCCAAACCACTCTCTATAATCAAGAGAAAGCCAAAGCTGAGTTTGCAAAAGCCAAAGAACAACTACAAAAAGAAGGGGT
AGAATTCCCAATTCATTTAGATTACGTTGTTAGTCAGACAGATAACAGCCAGGTACAACAAGCTAGCTCCTTCAAACAAT
CCGTAGAAGCTGTTCTCGGTGCAGACAATGTTGTCGTAGATATTCAGAAATTATCTGATGATGACTTTAACAATATTACC
TACTTTACAGACACTGCTGCTGAGAAAGATTATGACCTTGCAGGCGGAGGATGGGTGCCAGACTATCAAGATCCATCTAC
TTATTTAGAGAGTTTAAGTCCTGTTAATGGTTCTGTTTTCTACTATCTAGGTGTGGATGCAGGATCAAATAGCCCTGCTA
TTACAGCGGTTGACTTTGGGAAGTATGCAGAACTCTTAAAAGATGCCAATGCAGAAGTGAATGATCAAGCTCTACGCTAT
GAGAAATACGCAGCTGCTCAAGCATGGCTAACCGATAGTTCTTTGATCTTACCAACCGTTTCAAATGGTGGAACGCCAAT
GTTGCAACGAACTGTTCCGTATAGTCGTGCAGCTTCATGGGTTGGAACAAAAGGAACTGGAACCAACTATAAATATCTTG
AACTTTCAGAAGAAGTCATCAAGACAAAGGATTACGATGCAAGTAAAGAAAAATGGTTGAAAGAAAAGGCTGAATCCAAT
AAAAAAGCCCAAGAAGAATTAAAGAACCACATCGAATCTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.182

100

0.537
  amiA3 Streptococcus thermophilus LMG 18311

52.727

100

0.532
  amiA Streptococcus salivarius strain HSISS4

52.807

100

0.532

Multiple sequence alignment