Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   N597_RS01100 Genome accession   NC_022582
Coordinates   232674..233741 (+) Length   355 a.a.
NCBI ID   WP_023022224.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 227674..238741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS01085 (N597_01120) amiA3 228187..230172 (+) 1986 WP_023022217.1 peptide ABC transporter substrate-binding protein Regulator
  N597_RS01090 (N597_01125) amiC 230237..231736 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  N597_RS01095 (N597_01130) amiD 231736..232662 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator
  N597_RS01100 (N597_01135) amiE 232674..233741 (+) 1068 WP_023022224.1 ABC transporter ATP-binding protein Regulator
  N597_RS01105 (N597_01140) amiF 233751..234674 (+) 924 WP_023022226.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39718.41 Da        Isoelectric Point: 4.7597

>NTDB_id=62890 N597_RS01100 WP_023022224.1 232674..233741(+) (amiE) [Streptococcus ilei]
MTNDKNVILSARDIVVEFDVRDRVLTAIRNVSLDLVEGEVMALVGESGSGKSVLTKTFTGMLEENGRIANGTINYRGQEL
TELKSNKDWEEIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAREMAIDYMEKVGIPEAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYNFTTIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPRHPYTWSLLSSLPQLSTSKGDLFSIPGTPPSLYSPVKGDAFALRSDYAMQIDFEEHPPVFKVSDTHWAK
TWLLHEDAPKVNKPEIIDNLHEKISAKMGFTTIKD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=62890 N597_RS01100 WP_023022224.1 232674..233741(+) (amiE) [Streptococcus ilei]
ATGACAAATGATAAAAATGTAATCTTATCTGCTCGCGATATCGTAGTAGAATTTGATGTTCGGGATCGTGTCTTAACAGC
TATTCGCAATGTCTCTTTGGATCTTGTTGAAGGAGAGGTCATGGCGCTTGTTGGTGAATCAGGTTCTGGTAAATCTGTTT
TGACAAAAACTTTTACAGGAATGTTAGAAGAAAACGGACGAATTGCCAATGGGACCATTAATTATCGCGGGCAAGAATTA
ACAGAACTCAAGTCAAACAAAGATTGGGAAGAAATTCGTGGTGCAAAAATTGCAACGATCTTCCAAGACCCAATGACCAG
TTTGGACCCGATTAATACAATCGGATCACAAATTACAGAGGTTATTATTAAACACCAAGGCAAGAGTGCAAAAGAAGCCA
GAGAAATGGCTATTGACTATATGGAAAAGGTGGGAATCCCGGAAGCAGAACGTCGCTTTGATGAATATCCTTTCCAATAT
TCAGGTGGGATGCGCCAACGGATCGTTATTGCTATTGCGCTTGCTTGCCGTCCTGATATCTTGATCTGTGACGAGCCTAC
AACGGCCCTCGACGTAACTATTCAAGCCCAAATCATTGACTTGTTGAAATCATTACAAAAAGAATATAACTTTACAACAA
TATTTATCACCCATGATTTGGGTGTGGTGGCAAGTATTGCAGATAAGGTTGCCGTAATGTATGCTGGTGAAATTGTAGAA
TTTGGTAAAGTAGAAGAAATTTTCTATGACCCAAGACATCCTTATACATGGAGTCTTCTTTCAAGTTTGCCACAGTTGTC
TACTTCTAAGGGTGATTTATTTTCTATCCCAGGGACTCCTCCATCATTGTACTCACCGGTAAAAGGGGATGCCTTTGCTT
TGCGCTCAGACTATGCCATGCAAATTGATTTTGAGGAACATCCACCAGTTTTCAAAGTTTCAGATACACATTGGGCTAAA
ACGTGGCTCTTGCATGAAGATGCACCAAAAGTCAATAAACCAGAAATTATTGATAATCTTCATGAAAAAATAAGTGCAAA
AATGGGATTCACTACAATCAAGGACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

84.507

100

0.845
  amiE Streptococcus thermophilus LMG 18311

82.817

100

0.828
  amiE Streptococcus thermophilus LMD-9

82.817

100

0.828
  oppD Streptococcus mutans UA159

56.522

97.183

0.549

Multiple sequence alignment