Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   KXU59_RS19850 Genome accession   NZ_CP087266
Coordinates   4215898..4216218 (+) Length   106 a.a.
NCBI ID   WP_213387408.1    Uniprot ID   -
Organism   Aeromonas veronii strain HD6448     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4210898..4221218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXU59_RS19835 (LOS88_19835) yfbV 4211338..4211778 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  KXU59_RS19840 (LOS88_19840) - 4212083..4213285 (+) 1203 WP_005349210.1 acetate kinase -
  KXU59_RS19845 (LOS88_19845) pta 4213340..4215520 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  KXU59_RS19850 (LOS88_19850) comE1/comEA 4215898..4216218 (+) 321 WP_213387408.1 ComEA family DNA-binding protein Machinery gene
  KXU59_RS19855 (LOS88_19855) galU 4216315..4217226 (+) 912 WP_115521678.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KXU59_RS19860 (LOS88_19860) - 4217440..4218837 (+) 1398 WP_021231963.1 peptide MFS transporter -
  KXU59_RS19865 (LOS88_19865) - 4218911..4219882 (-) 972 WP_244776260.1 response regulator -
  KXU59_RS19870 (LOS88_19870) - 4220123..4220821 (+) 699 WP_244776262.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11288.24 Da        Isoelectric Point: 9.6564

>NTDB_id=628267 KXU59_RS19850 WP_213387408.1 4215898..4216218(+) (comE1/comEA) [Aeromonas veronii strain HD6448]
MLMKKLSAIMLLACLPLFSQPVLAADKATPKQTTTAEAAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=628267 KXU59_RS19850 WP_213387408.1 4215898..4216218(+) (comE1/comEA) [Aeromonas veronii strain HD6448]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGTTAGCCTGCTTGCCCCTGTTCAGCCAACCCGTGTTGGCCGCAGATAA
GGCCACGCCCAAGCAAACAACCACAGCCGAGGCCGCCAAGGAGTCCGGCAAGCTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGTCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

51.786

100

0.547
  comEA/comE1 Glaesserella parasuis strain SC1401

46.903

100

0.5
  comEA Vibrio cholerae C6706

47.17

100

0.472
  comEA Vibrio cholerae strain A1552

47.17

100

0.472
  comEA Vibrio parahaemolyticus RIMD 2210633

44

94.34

0.415
  comEA Legionella pneumophila str. Paris

40.404

93.396

0.377
  comEA Legionella pneumophila strain ERS1305867

40.404

93.396

0.377
  comEA Vibrio campbellii strain DS40M4

37.143

99.057

0.368