Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY34_RS24330 Genome accession   NZ_CP087199
Coordinates   5265723..5266235 (-) Length   170 a.a.
NCBI ID   WP_045200019.1    Uniprot ID   A0A1H1A2L1
Organism   Pseudomonas sp. B21-009     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5260723..5271235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY34_RS24315 (LOY34_24290) - 5260850..5261503 (-) 654 WP_045200010.1 formate dehydrogenase subunit gamma -
  LOY34_RS24320 (LOY34_24295) fdxH 5261500..5262450 (-) 951 WP_045200013.1 formate dehydrogenase subunit beta -
  LOY34_RS24325 (LOY34_24300) fdnG 5262450..5265515 (-) 3066 WP_156160223.1 formate dehydrogenase-N subunit alpha -
  LOY34_RS24330 (LOY34_24305) ssb 5265723..5266235 (-) 513 WP_045200019.1 single-stranded DNA-binding protein Machinery gene
  LOY34_RS24335 (LOY34_24310) - 5266245..5267639 (-) 1395 WP_045200021.1 MFS transporter -
  LOY34_RS24340 (LOY34_24315) uvrA 5267769..5270603 (+) 2835 WP_045200024.1 excinuclease ABC subunit UvrA -
  LOY34_RS24345 (LOY34_24320) bfr 5270664..5271128 (-) 465 WP_045200027.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18940.06 Da        Isoelectric Point: 5.9314

>NTDB_id=627965 LOY34_RS24330 WP_045200019.1 5265723..5266235(-) (ssb) [Pseudomonas sp. B21-009]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQNQDGAPQGGNNYNQAPRQQAPRPQQSAPQQRPAPQQAAPQPAPD
FDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=627965 LOY34_RS24330 WP_045200019.1 5265723..5266235(-) (ssb) [Pseudomonas sp. B21-009]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGCGCACCGAAT
GGCACCGCGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGTGAATACCTGCGCAAAGGCTCGCAAGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACCGAAATCGTTGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGCCCGCAGAACCAGGACGGCGCCCCGCAAGGCGGCAACAATTACAACCAGGCGCCACGCC
AACAGGCTCCGCGTCCACAGCAGTCCGCGCCGCAACAGCGCCCGGCGCCTCAGCAGGCCGCACCGCAGCCGGCTCCGGAC
TTCGACAGCTTCGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1A2L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.889

100

0.624
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.529
  ssb Neisseria meningitidis MC58

50.282

100

0.524
  ssb Neisseria gonorrhoeae MS11

50.282

100

0.524