Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LOY38_RS27590 Genome accession   NZ_CP087196
Coordinates   6059613..6061679 (-) Length   688 a.a.
NCBI ID   WP_258697931.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6054613..6066679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY38_RS27575 (LOY38_27515) - 6056215..6057828 (-) 1614 WP_258697928.1 AAA family ATPase -
  LOY38_RS27580 (LOY38_27520) aroB 6057839..6058939 (-) 1101 WP_258697929.1 3-dehydroquinate synthase -
  LOY38_RS27585 (LOY38_27525) aroK 6059090..6059608 (-) 519 WP_258697930.1 shikimate kinase AroK -
  LOY38_RS27590 (LOY38_27530) pilQ 6059613..6061679 (-) 2067 WP_258697931.1 type IV pilus secretin PilQ Machinery gene
  LOY38_RS27595 (LOY38_27535) - 6061693..6062220 (-) 528 WP_258697932.1 pilus assembly protein PilP -
  LOY38_RS27600 (LOY38_27540) pilO 6062217..6062840 (-) 624 WP_258697933.1 type 4a pilus biogenesis protein PilO -
  LOY38_RS27605 (LOY38_27545) - 6062837..6063403 (-) 567 WP_258697934.1 PilN domain-containing protein -
  LOY38_RS27610 (LOY38_27550) comM 6063403..6064467 (-) 1065 WP_258697935.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 74486.63 Da        Isoelectric Point: 5.7656

>NTDB_id=627889 LOY38_RS27590 WP_258697931.1 6059613..6061679(-) (pilQ) [Pseudomonas sp. B21-015]
MNRIFSTFGISLWIAFLSPMVQAANLKTLDVAALPGDRVELKLSFDGPPPQPQGYTTEQPARIALDLPGVTSQLANKNRD
LGGGNARSATVVEAKNRTRLIISLTQLTPYNARVEGNNLFVVVGQGGGSKASKPITSAPRTATATPAPARVNAPVGKAIR
GVDFQRGTQGEGNVVIDLSDPSIAPDIQEHDGKIIVGFTKTQLPERLRVRLDVKDFATPVQFVNASATGDRATISIEPSG
AFDYSTYQTDNKLTVSIRPMTVDDLQKRNTERFAYTGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KIDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEASVDYDKQLGVRWGGSKTDGNWTGSGGAS
PGNPITGQSTSQPFVDLGATSATSGIGISFITDNTLLDLELSAMEKTGNGEIVSQPKVVTADKETAKILKGTEIPYPESS
SSGATSVTFKPAVLSLEVTPQITPDNRIIMEVKVTKDQPDYANLVLGQPPINKNEVNAKVLINDGETIVIGGVFSNTQSK
VVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=627889 LOY38_RS27590 WP_258697931.1 6059613..6061679(-) (pilQ) [Pseudomonas sp. B21-015]
ATGAACAGGATTTTCTCAACCTTCGGTATTTCGCTATGGATAGCGTTTCTGTCGCCGATGGTACAGGCGGCCAACCTCAA
AACGCTGGATGTCGCCGCGCTGCCCGGTGATCGCGTCGAGTTGAAGTTGTCGTTCGATGGGCCGCCGCCGCAGCCCCAGG
GTTATACGACAGAGCAGCCTGCGCGGATTGCGCTGGATCTGCCGGGGGTCACCAGTCAGCTGGCGAACAAGAATCGAGAC
CTGGGCGGCGGCAACGCCCGCAGCGCCACGGTGGTGGAGGCCAAGAACCGCACACGGCTGATCATCAGCCTGACCCAGTT
AACCCCGTATAACGCCCGCGTCGAAGGCAACAATCTGTTCGTGGTCGTCGGGCAGGGGGGCGGTAGCAAGGCGTCTAAAC
CGATCACCAGCGCGCCGCGCACAGCCACTGCGACGCCAGCGCCCGCCAGGGTCAATGCCCCCGTGGGCAAAGCCATCCGG
GGCGTGGATTTCCAGCGCGGCACCCAGGGTGAAGGCAATGTGGTTATCGATCTGTCGGATCCGTCCATCGCCCCGGACAT
CCAGGAGCACGATGGCAAGATCATCGTCGGTTTCACCAAGACCCAACTGCCTGAACGGTTGCGCGTGCGCCTCGACGTCA
AGGATTTCGCCACGCCGGTGCAGTTCGTCAACGCCAGCGCCACAGGTGATCGGGCCACCATCAGTATCGAGCCCAGCGGC
GCCTTCGATTATTCGACCTATCAGACCGACAACAAACTGACCGTCAGCATCCGGCCGATGACTGTCGATGACCTGCAAAA
GCGCAATACCGAACGCTTTGCCTACACCGGCGAAAAACTCTCGCTGAATTTTCAGGACATCGATGTGCGCTCGGTGCTGC
AACTGATCGCCGATTTCACCAACCTCAATCTGGTCGCCAGCGACACGGTGCAGGGCGGCATCACGTTGCGCCTGCAGAAC
GTGCCATGGGATCAGGCGCTGGACCTGGTGTTGAAAACCAAAGGTCTGGATAAACGCAAAATCGGTAACGTGCTGCTGGT
GGCGCCGGCCGATGAAATTGCCGCCCGGGAGCGTCAGGAGCTGGAGTCGCAGAAGCAGATCGCCGAACTGGCGCCTCTGC
GTCGCGAACTGTTGCAGGTCAACTACGCCAAGGCCGCCGATATTGCCAAGCTGTTCCAGTCGGTGACCAGTGCCGAGGCG
AAAATAGACGAGCGCGGTTCAATCACGGTCGATGAGCGGACCAACAATATCATTGCCTACCAGACCCAGGATCGCCTCGA
TGAACTGCGCCGCATCGTGGCGCAGCTGGATATTCCGGTGCGTCAGGTAATGATCGAGGCGCGCATCGTCGAAGCTAGCG
TTGATTACGACAAGCAGTTGGGCGTGCGATGGGGTGGAAGCAAGACCGATGGTAATTGGACAGGGTCGGGCGGTGCTTCT
CCCGGCAACCCCATTACAGGGCAAAGCACCAGCCAACCCTTTGTTGATCTGGGCGCTACAAGTGCCACGTCCGGGATCGG
CATTTCCTTTATCACTGACAACACGCTGCTGGACCTCGAGTTGAGCGCCATGGAAAAAACCGGCAATGGCGAAATTGTTT
CGCAACCCAAGGTGGTCACGGCTGATAAGGAAACCGCGAAGATCCTGAAAGGTACTGAAATTCCGTATCCGGAATCCAGT
TCCAGCGGCGCGACGTCGGTGACGTTCAAGCCGGCAGTCCTTTCGCTGGAGGTGACCCCGCAGATCACCCCGGACAATCG
CATTATCATGGAGGTCAAGGTCACCAAGGATCAGCCGGACTACGCTAACCTGGTCCTTGGGCAGCCGCCGATCAACAAAA
ACGAAGTCAACGCCAAGGTCCTGATCAACGACGGCGAGACCATCGTCATTGGTGGGGTTTTCTCAAATACTCAGAGCAAG
GTTGTAGATAAGGTGCCATTTCTCGGTGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGTTTCGGAGAAAAA
ATCCGAGCTGCTGGTCTTTCTCACACCGCGTATCATGAACAATCAGGCGATTGCTGTGAGTCATTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-121)

Bacterial type II and III secretion system protein (Secretin)

(523-679)

Secretin and TonB N terminus short domain (STN)

(303-349)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.409

100

0.751
  comQ Acinetobacter baylyi ADP1

41.265

100

0.436
  pilQ Acinetobacter baumannii strain A118

38.38

100

0.42
  pilQ Acinetobacter baumannii D1279779

38.38

100

0.42
  pilQ Legionella pneumophila strain ERS1305867

38.633

97.82

0.378
  pilQ Legionella pneumophila strain Lp02

38.484

97.82

0.376